Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transglycosylase slt domain protein | HMPREF3040_01244 | Not Available | Positive | 1206328 - 1206831 | 19223.9 |
| transcriptional regulator, luxr family | HMPREF3040_01245 | Not Available | Negative | 1206850 - 1207515 | 24878.3 |
| hypothetical protein | HMPREF3040_01246 | Not Available | Negative | 1207705 - 1208412 | 27216.7 |
| type iii secretion apparatus protein orga/mxik | HMPREF3040_01247 | Not Available | Negative | 1208354 - 1208935 | 22773.9 |
| type iii secretion apparatus lipoprotein, yscj/hrcj family | HMPREF3040_01248 | Not Available | Negative | 1208951 - 1209685 | 27777.8 |
| type iii secretion apparatus protein, ysci/hrpb protein | HMPREF3040_01249 | Not Available | Negative | 1209682 - 1209999 | 11742.0 |
| type iii secretion apparatus needle protein | HMPREF3040_01250 | Not Available | Negative | 1210034 - 1210273 | 9038.44 |
| type iii secretion apparatus protein prgh/eprh | HMPREF3040_01251 | Not Available | Negative | 1210287 - 1211468 | 45161.5 |
| transcriptional regulator, luxr family | HMPREF3040_01252 | Not Available | Positive | 1211727 - 1212227 | 19131.0 |
| hypothetical protein | HMPREF3040_01253 | Not Available | Positive | 1212229 - 1212522 | 11202.4 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





