Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| serine transporter | HMPREF3040_01234 | Not Available | Positive | 1197996 - 1199225 | 45116.0 |
| hypothetical protein | HMPREF3040_01235 | Not Available | Positive | 1199799 - 1200317 | 20079.1 |
| transcriptional regulatory protein | HMPREF3040_01236 | Not Available | Positive | 1200651 - 1201460 | 30794.7 |
| hypothetical protein | HMPREF3040_01237 | Not Available | Positive | 1201453 - 1201935 | 18733.6 |
| hypothetical protein | HMPREF3040_01238 | Not Available | Negative | 1201968 - 1202093 | 4994.24 |
| hypothetical protein | HMPREF3040_01239 | Not Available | Negative | 1202084 - 1202509 | 16229.4 |
| hypothetical protein | HMPREF3040_01240 | Not Available | Positive | 1202939 - 1203430 | 18676.8 |
| tetratricopeptide repeat protein | HMPREF3040_01241 | Not Available | Positive | 1203656 - 1204147 | 18953.0 |
| tetratricopeptide repeat protein | HMPREF3040_01242 | Not Available | Positive | 1204482 - 1205858 | 52739.8 |
| hypothetical protein | HMPREF3040_01243 | Not Available | Positive | 1206026 - 1206244 | 8184.41 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





