Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator, deor family | HMPREF3040_01191 | Not Available | Positive | 1151603 - 1152334 | 27363.7 |
| putative rna 2'-o-ribose methyltransferase ygde | HMPREF3040_01192 | Not Available | Negative | 1152378 - 1153478 | 41907.5 |
| hypothetical protein | HMPREF3040_01193 | Not Available | Negative | 1153471 - 1153866 | 14334.0 |
| glycine cleavage system transcriptional activator | HMPREF3040_01194 | Not Available | Negative | 1153885 - 1154802 | 34403.4 |
| hypothetical protein | HMPREF3040_01196 | Not Available | Negative | 1155154 - 1155384 | 8305.88 |
| cysteine desulfurase, catalytic subunit csda | HMPREF3040_01197 | Not Available | Positive | 1155573 - 1156778 | 43183.5 |
| cysteine desulfurase, sulfur acceptor subunit csde | HMPREF3040_01198 | Not Available | Positive | 1156778 - 1157221 | 15939.2 |
| thif family protein | HMPREF3040_01199 | Not Available | Negative | 1157272 - 1158078 | 28577.7 |
| membrane-bound lytic murein transglycosylase a | HMPREF3040_01200 | Not Available | Negative | 1158336 - 1159433 | 40412.9 |
| Trna-met | Not Available | Not Available | Positive | 1159642 - 1159718 | Not Available |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





