Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-serine ammonia-lyase | HMPREF3040_01181 | Not Available | Positive | 1141762 - 1143129 | 48725.8 |
| hypothetical protein | HMPREF3040_01182 | Not Available | Negative | 1143126 - 1143419 | 10762.7 |
| 5'-3' exonuclease, sam domain protein | HMPREF3040_01183 | Not Available | Positive | 1143456 - 1143995 | 20067.0 |
| lactaldehyde reductase | HMPREF3040_01184 | Not Available | Negative | 1144100 - 1145251 | 40646.9 |
| l-fuculose phosphate aldolase | HMPREF3040_01185 | Not Available | Negative | 1145276 - 1145923 | 23786.7 |
| hypothetical protein | HMPREF3040_01186 | Not Available | Negative | 1146107 - 1146280 | 6599.32 |
| l-fucose:h+ symporter permease | HMPREF3040_01187 | Not Available | Positive | 1146470 - 1147786 | 47547.6 |
| arabinose isomerase | HMPREF3040_01188 | Not Available | Positive | 1147819 - 1149594 | 65010.3 |
| l-fuculokinase | HMPREF3040_01189 | Not Available | Positive | 1149673 - 1151121 | 53182.8 |
| l-fucose mutarotase | HMPREF3040_01190 | Not Available | Positive | 1151123 - 1151545 | 15474.0 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





