Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF3040_01170 | Not Available | Positive | 1134480 - 1134608 | 4993.09 |
| flavodoxin | HMPREF3040_01171 | Not Available | Negative | 1134721 - 1135170 | 16298.1 |
| rna pseudouridine synthase | HMPREF3040_01172 | Not Available | Negative | 1135188 - 1135970 | 29667.5 |
| hypothetical protein | HMPREF3040_01173 | Not Available | Negative | 1135970 - 1136299 | 12787.2 |
| syd protein | HMPREF3040_01175 | Not Available | Negative | 1136921 - 1137466 | 20679.5 |
| queuine synthase | HMPREF3040_01176 | Not Available | Positive | 1137534 - 1138382 | 32559.2 |
| hypothetical protein | HMPREF3040_01177 | Not Available | Negative | 1138605 - 1138922 | 11611.6 |
| putative lysine decarboxylase | HMPREF3040_01178 | Not Available | Positive | 1138941 - 1139858 | 34128.5 |
| hypothetical protein | HMPREF3040_01179 | Not Available | Positive | 1139942 - 1140073 | 5055.33 |
| serine transporter | HMPREF3040_01180 | Not Available | Positive | 1140415 - 1141704 | 46909.2 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





