Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadh ubiquinone oxidoreductase, subunit | HMPREF3040_01090 | Not Available | Negative | 1054766 - 1055533 | 27999.7 |
| 4fe-4s binding domain protein | HMPREF3040_01091 | Not Available | Negative | 1055533 - 1056075 | 20343.4 |
| respiratory-chain nadh dehydrogenase, subunit | HMPREF3040_01092 | Not Available | Negative | 1056085 - 1057815 | 65804.1 |
| nadh dehydrogenase | HMPREF3040_01093 | Not Available | Negative | 1057812 - 1058735 | 33055.5 |
| formate hydrogenlyase subunit 3 | HMPREF3040_01094 | Not Available | Negative | 1058738 - 1060564 | 64143.2 |
| hydrogenase-4 component a | HMPREF3040_01095 | Not Available | Negative | 1060561 - 1061172 | 21874.4 |
| formate hydrogenlyase regulatory protein hyca | HMPREF3040_01096 | Not Available | Negative | 1061297 - 1061758 | 17627.9 |
| hypothetical protein | HMPREF3040_01097 | Not Available | Negative | 1061792 - 1061929 | 5171.21 |
| hydrogenase nickel insertion protein hypa | HMPREF3040_01098 | Not Available | Positive | 1061958 - 1062320 | 13529.3 |
| hydrogenase accessory protein hypb | HMPREF3040_01099 | Not Available | Positive | 1062435 - 1063196 | 27678.3 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





