Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein elab | HMPREF3040_00960 | Not Available | Positive | 923406 - 923711 | 11306.3 |
| isochorismate synthase | HMPREF3040_00961 | Not Available | Positive | 923790 - 925085 | 48719.3 |
| 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase | HMPREF3040_00962 | Not Available | Positive | 925174 - 926844 | 61430.6 |
| 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase | HMPREF3040_00963 | Not Available | Positive | 926841 - 927599 | 27807.0 |
| naphthoate synthase | HMPREF3040_00964 | Not Available | Positive | 927614 - 928471 | 31604.8 |
| o-succinylbenzoate synthase | HMPREF3040_00965 | Not Available | Positive | 928471 - 929433 | 35515.6 |
| o-succinylbenzoate-coa ligase | HMPREF3040_00966 | Not Available | Positive | 929430 - 930785 | 49979.3 |
| signal transduction protein pmrd | HMPREF3040_00967 | Not Available | Positive | 930865 - 931161 | 10933.2 |
| hypothetical protein | HMPREF3040_00968 | Not Available | Negative | 931155 - 931541 | 14072.0 |
| multidrug resistance protein, smr family | HMPREF3040_00969 | Not Available | Negative | 931541 - 931876 | 12192.7 |
Pathways
12799 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





