Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF3040_03858 | Not Available | Negative | 3681896 - 3682201 | 11625.9 |
| Hnh endonuclease | HMPREF3040_03859 | Not Available | Positive | 3682275 - 3682625 | 13196.8 |
| Small terminase subunit | HMPREF3040_03860 | Not Available | Positive | 3682751 - 3683245 | 17927.8 |
| Large terminase subunit | HMPREF3040_03861 | Not Available | Positive | 3683242 - 3684975 | 65411.7 |
| Hypothetical protein | HMPREF3040_03862 | Not Available | Positive | 3684987 - 3685169 | 6407.22 |
| Portal protein | HMPREF3040_03863 | Not Available | Positive | 3685169 - 3686410 | 46089.9 |
| Prohead protease | HMPREF3040_03864 | Not Available | Positive | 3686388 - 3687038 | 24065.6 |
| Phage major capsid protein | HMPREF3040_03865 | Not Available | Positive | 3687053 - 3688258 | 44296.7 |
| Hypothetical protein | HMPREF3040_03866 | Not Available | Positive | 3688307 - 3688507 | 7130.56 |
| Head-tail connector protein | HMPREF3040_03867 | Not Available | Positive | 3688510 - 3688833 | 12504.9 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





