Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Hypothetical protein | HMPREF3040_03848 | Not Available | Positive | 3675655 - 3676497 | 31293.6 |
| Hypothetical protein | HMPREF3040_03849 | Not Available | Positive | 3676541 - 3677494 | 35808.2 |
| Antiterminator protein q | HMPREF3040_03850 | Not Available | Positive | 3677512 - 3677868 | 13292.2 |
| hypothetical protein | HMPREF3040_03851 | Not Available | Negative | 3677848 - 3679062 | 46485.8 |
| Putative nucleoid-associated protein | HMPREF3040_03852 | Not Available | Negative | 3679065 - 3680240 | 44153.2 |
| hypothetical protein | HMPREF3040_03853 | Not Available | Positive | 3680262 - 3680414 | 5713.07 |
| Class i holin | HMPREF3040_03854 | Not Available | Positive | 3680532 - 3680858 | 11419.1 |
| Lysin | HMPREF3040_03855 | Not Available | Positive | 3680862 - 3681338 | 17709.0 |
| Putative rz lytic protein | HMPREF3040_03856 | Not Available | Positive | 3681322 - 3681714 | 14265.8 |
| hypothetical protein | HMPREF3040_03857 | Not Available | Negative | 3681748 - 3681912 | 6092.4 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





