Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-oxoacyl-(acyl carrier protein) synthase i | HMPREF3040_00779 | Not Available | Positive | 748034 - 749203 | 41038.1 |
| hypothetical protein | HMPREF3040_00780 | Not Available | Positive | 749248 - 749664 | 14764.7 |
| putative 3-oxoacyl-(acyl-carrier-protein) reductase | HMPREF3040_00781 | Not Available | Positive | 749664 - 750395 | 25678.1 |
| 3-oxoacyl-(acyl carrier protein) synthase ii | HMPREF3040_00782 | Not Available | Positive | 750392 - 751621 | 44109.3 |
| 4'-phosphopantetheinyl transferase family protein | HMPREF3040_00783 | Not Available | Positive | 751623 - 752210 | 21724.8 |
| nickel abc transporter, periplasmic nickel-binding protein | HMPREF3040_00784 | Not Available | Positive | 752321 - 753895 | 58810.2 |
| nickel abc transporter, permease subunit nikb | HMPREF3040_00785 | Not Available | Positive | 753895 - 754839 | 35280.3 |
| nickel abc transporter, permease subunit nikc | HMPREF3040_00786 | Not Available | Positive | 754836 - 755669 | 30363.8 |
| nickel import atp-binding protein nikd | HMPREF3040_00787 | Not Available | Positive | 755669 - 756433 | 26814.1 |
| nickel import atp-binding protein nike | HMPREF3040_00788 | Not Available | Positive | 756430 - 757236 | 29728.4 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





