Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | E4223 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1196697 bp
Thymine Count
1191172 bp
Guanine Count
1229268 bp
Cytosine Count
1234068 bp
Genome Length
4851238 bp
Protein-coding Genes
3982 genes
Non-Coding Genes
299 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system tip protein vgrg | E5E93_13015 | Not Available | Negative | 2681460 - 2683448 | 74122.6 |
| hcp family type vi secretion system effector | E5E93_13020 | Not Available | Negative | 2683669 - 2684187 | 19191.7 |
| type vi secretion system contractile sheath small subunit | E5E93_13025 | Not Available | Positive | 2684892 - 2685395 | 18424.2 |
| type vi secretion system contractile sheath large subunit | E5E93_13030 | Not Available | Positive | 2685418 - 2686902 | 55644.8 |
| type vi secretion system baseplate subunit tsse | E5E93_13035 | Not Available | Positive | 2686907 - 2687332 | 16084.9 |
| type vi secretion system baseplate subunit tssf | E5E93_13040 | Not Available | Positive | 2687338 - 2689179 | 70840.7 |
| type vi secretion system baseplate subunit tssg | E5E93_13045 | Not Available | Positive | 2689143 - 2690192 | 39162.1 |
| type vi secretion system-associated fha domain protein tagh | E5E93_13050 | Not Available | Positive | 2690197 - 2691489 | 47804.6 |
| type vi secretion system lipoprotein tssj | E5E93_13055 | Not Available | Positive | 2691486 - 2692010 | 19283.9 |
| type vi secretion system baseplate subunit tssk | E5E93_13060 | Not Available | Positive | 2692013 - 2693359 | 49877.3 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





