Escherichia coli str. CRE10

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain CRE10 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at 37.0°C, a temperature that corresponds to the average body temperature of warm-blooded hosts, indicating its adaptation to host-associated habitats. As a facultative anaerobe, E. coli CRE10 can grow in both the presence and absence of oxygen, allowing it to inhabit various microenvironments within its host. The strain's Gram-negative status suggests the presence of a distinctive outer membrane, which may contribute to its resilience in diverse ecological niches. E. coli strains are commonly found in the intestines of warm-blooded organisms, where they play a role in nutrient absorption and gut health. However, the specific ecological role of CRE10 within its host remains to be fully elucidated. Understanding the growth conditions and physiological properties of E. coli CRE10 can provide insights into its potential interactions within the microbial community of its host, as well as its adaptability to different environmental conditions. This adaptability may influence its role in digestive processes or its response to competitive microbial populations within the gut ecosystem. Overall, the traits of E. coli CRE10 highlight its versatility and potential significance in host-associated microbiomes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainCRE10

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli str. CRE10
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain CRE10 plasmid pCRE10.3, complete sequence.

Gene Summary

Adenine Count

16836 bp

Thymine Count

18666 bp

Guanine Count

13442 bp

Cytosine Count

12740 bp

Genome Length

61684 bp

Protein-coding Genes

77 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
response regulator receiver domainEJC75_RS12145Not AvailableNegative2113323 - 211507166523.2
atp-binding proteinEJC75_RS12150Not AvailableNegative2115073 - 211679166088.7
is3-like element is3 family transposaseEJC75_RS12155Not AvailableNegative2116943 - 211810545023.8
isas1 family transposaseEJC75_RS12160Not AvailablePositive2118172 - 211927940316.3
glutarate dioxygenase glahEJC75_RS12165Not AvailablePositive2119615 - 212059237386.6
l-2-hydroxyglutarate oxidaseEJC75_RS12170Not AvailablePositive2120612 - 212188046085.6
nadp-dependent succinate-semialdehyde dehydrogenaseEJC75_RS12175Not AvailablePositive2121903 - 212335151778.1
4-aminobutyrate--2-oxoglutarate transaminaseEJC75_RS12180Not AvailablePositive2123365 - 212464545707.3
gaba permeaseEJC75_RS12185Not AvailablePositive2124956 - 212635651083.1
dna-binding transcriptional regulator csirEJC75_RS12190Not AvailablePositive2126377 - 212703924992.3

Displaying genes 2531 – 2540 of 5176 in total

Metabolites

4812 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4812 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total