Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | HPCN26 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1359008 bp
Thymine Count
1364318 bp
Guanine Count
1328836 bp
Cytosine Count
1338252 bp
Genome Length
5390414 bp
Protein-coding Genes
5232 genes
Non-Coding Genes
291 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yscq/hrcq family type iii secretion apparatus protein | DQE83_04225 | Not Available | Positive | 830663 - 831610 | 36254.4 |
| escr/yscr/hrcr family type iii secretion system export apparatus protein | DQE83_04230 | Not Available | Positive | 831600 - 832265 | 24510.5 |
| escs/yscs/hrcs family type iii secretion system export apparatus protein | DQE83_04235 | Not Available | Positive | 832275 - 832535 | 9430.85 |
| esct/ysct/hrct family type iii secretion system export apparatus protein | DQE83_04240 | Not Available | Positive | 832537 - 833304 | 28137.7 |
| escu/yscu/hrcu family type iii secretion system export apparatus switch protein | DQE83_04245 | Not Available | Positive | 833313 - 834434 | 43343.4 |
| invasion protein | DQE83_04250 | Not Available | Negative | 834495 - 834788 | 11161.4 |
| luxr family transcriptional regulator | DQE83_04255 | Not Available | Negative | 834790 - 835290 | 19131.0 |
| prgh/eprh family type iii secretion apparatus protein | DQE83_04260 | Not Available | Positive | 835540 - 836730 | 45438.8 |
| type iii secretion system needle complex protein | DQE83_04265 | Not Available | Positive | 836744 - 836983 | 9038.44 |
| hypothetical protein | DQE83_04270 | Not Available | Positive | 837003 - 837335 | 12260.6 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





