Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | EK2009 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1134123 bp
Thymine Count
1132866 bp
Guanine Count
1167947 bp
Cytosine Count
1170079 bp
Genome Length
4605015 bp
Protein-coding Genes
4236 genes
Non-Coding Genes
267 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Tmrna,resume consensus sequence (at 83): aatagtcgcaaacgacga | Not Available | Not Available | Positive | 2719356 - 2719718 | Not Available |
| integrase | FE383_RS13340 | Not Available | Positive | 2719922 - 2721163 | 46654.3 |
| protein yfjh | FE383_RS13345 | Not Available | Negative | 2721407 - 2722363 | 37141.4 |
| dna-binding transcriptional activator alpa | FE383_RS13350 | Not Available | Positive | 2722407 - 2722619 | 8133.06 |
| yfji family protein | FE383_RS13355 | Not Available | Positive | 2722748 - 2724157 | 54029.6 |
| inovirus gp2 family protein | FE383_RS13360 | Not Available | Positive | 2724310 - 2724936 | 24562.0 |
| dead/deah box helicase | FE383_RS13365 | Not Available | Negative | 2725114 - 2727303 | 83066.5 |
| anti-bacteriophage protein abpa | FE383_RS13370 | Not Available | Negative | 2727300 - 2728916 | 62009.8 |
| duf1524 domain-containing protein | FE383_RS13375 | Not Available | Negative | 2729276 - 2729539 | 9967.83 |
| type ii toxin-antitoxin system toxin mrna endoribonuclease rnla | FE383_RS13380 | Not Available | Positive | 2729681 - 2730754 | 40063.5 |
Pathways
12799 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





