Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | EK2009 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1134123 bp
Thymine Count
1132866 bp
Guanine Count
1167947 bp
Cytosine Count
1170079 bp
Genome Length
4605015 bp
Protein-coding Genes
4236 genes
Non-Coding Genes
267 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein ydfb | FE383_RS22745 | Not Available | Positive | 1637582 - 1637710 | 4688.29 |
| protein ydfc | FE383_RS08095 | Not Available | Positive | 1637740 - 1637958 | 8350.92 |
| cell division inhibition protein dicb | FE383_RS08105 | Not Available | Positive | 1638526 - 1638714 | 6964.7 |
| lysis protein ydfd | FE383_RS08110 | Not Available | Positive | 1638711 - 1638902 | 6842.35 |
| Putative exonuclease | FE383_RS08115 | Not Available | Positive | 1638995 - 1639762 | 29247.7 |
| Is2 transposase tnpb | FE383_RS08120 | Not Available | Positive | 1639759 - 1640454 | 26248.2 |
| Attr | Not Available | Not Available | Positive | 1640309 - 1640320 | Not Available |
| Putative integrase | FE383_RS08125 | Not Available | Positive | 1640468 - 1641625 | 43663.5 |
| Zinc-containing alcohol dehydrogenase superfamily protein | FE383_RS08135 | Not Available | Negative | 1641813 - 1642832 | 36566.2 |
| starvation-sensing protein rspa | FE383_RS08140 | Not Available | Negative | 1642844 - 1644058 | 45971.0 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





