Escherichia coli str. EcSS20

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain EcSS20 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments, which is indicative of its versatile metabolic capabilities. Optimal growth for EcSS20 occurs at a temperature of 37.0 degrees Celsius, a characteristic that aligns with its association with host organisms, where it is often found in the gastrointestinal tract. The habitat of E. coli str. EcSS20 suggests a close relationship with its host, potentially playing a role in the microbiota that contributes to the host’s gut health. The ability to adapt to varying oxygen levels enhances its survival in the complex and dynamic conditions of the intestinal environment. The specific traits of E. coli str. EcSS20 may offer insights into its functional role in nutrient metabolism and interaction with the host immune system, underscoring the importance of understanding such strains in the broader context of microbial ecology and host-microbe interactions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainEcSS20

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli str. EcSS20
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain EcSS20 NODE_146_length_325_cov_33.070370,

Gene Summary

Adenine Count

1232373 bp

Thymine Count

1236884 bp

Guanine Count

1267441 bp

Cytosine Count

1249670 bp

Genome Length

4993062 bp

Protein-coding Genes

4543 genes

Non-Coding Genes

247 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trbi/virb10 family proteinERL57_22935Not AvailablePositive4749888 - 475100640746.0
p-type dna transfer atpase virb11ERL57_22940Not AvailablePositive4751008 - 475203638297.8
conjugal transfer protein tragERL57_22945Not AvailablePositive4752068 - 475388567442.9
cag pathogenicity island cag12 family proteinERL57_22950Not AvailablePositive4753894 - 475431615835.2
conjugal transfer proteinERL57_22955Not AvailablePositive4754300 - 475460510742.1
dna topoisomerase iiiERL57_22960Not AvailablePositive4754916 - 475548821695.0
type ia dna topoisomeraseERL57_22965Not AvailablePositive4755493 - 475764679104.5
hemolysin expression modulator hhaERL57_22970Not AvailablePositive4757643 - 47578498176.88
dna-binding proteinERL57_22975Not AvailablePositive4757867 - 475833117985.5
is6-like element is26 family transposaseERL57_22980Not AvailablePositive4758418 - 475912227896.9

Displaying genes 4521 – 4530 of 4794 in total

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total