Escherichia coli str. EC17GD31

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli str. EC17GD31 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions of its host-associated habitat. As a facultative anaerobe, E. coli str. EC17GD31 has the versatile ability to grow in both aerobic and anaerobic environments, allowing it to adapt to varying conditions within the host. The bacterium's Gram-negative nature suggests a complex cell wall structure, characterized by a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. This structural feature is indicative of the genus Escherichia, which is commonly found in the intestinal tracts of warm-blooded organisms. The host-associated nature of E. coli str. EC17GD31 points to a potential role in the gut microbiome, where it may contribute to the maintenance of intestinal health and functionality. The adaptability of E. coli str. EC17GD31 to different oxygen levels may enable it to occupy diverse niches within the host environment, facilitating its survival and potential interactions with other microbial inhabitants. Such versatility underscores the importance of this strain in understanding microbial dynamics and host-microbe interactions within the gastrointestinal tract.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainEC17GD31

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli str. EC17GD31
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain EC17GD31 chromosome, complete genome.

Gene Summary

Adenine Count

1232855 bp

Thymine Count

1232397 bp

Guanine Count

1257098 bp

Cytosine Count

1253482 bp

Genome Length

4975832 bp

Protein-coding Genes

4515 genes

Non-Coding Genes

289 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
iron-sulfur cluster insertion protein erpaDWB25_RS19390Not AvailableNegative3985885 - 398622912101.2
small protein yadwDWB25_RS19395Not AvailableNegative3986222 - 39862872329.94
h(+)/cl(-) exchange transporter clcaDWB25_RS19400Not AvailableNegative3986311 - 398773250337.9
protein yadxDWB25_RS28255Not AvailableNegative3987744 - 39877911806.13
glutamate-1-semialdehyde 2,1-aminomutaseDWB25_RS19405Not AvailablePositive3987957 - 398923745385.8
fe(3+)-hydroxamate abc transporter permease fhubDWB25_RS19410Not AvailableNegative3989272 - 399125470426.6
fe(3+)-hydroxamate abc transporter substrate-binding protein fhudDWB25_RS19415Not AvailableNegative3991251 - 399214133053.3
fe3+-hydroxamate abc transporter atp-binding protein fhucDWB25_RS19420Not AvailableNegative3992141 - 399293828872.2
ferrichrome porin fhuaDWB25_RS19425Not AvailableNegative3992989 - 399523282227.5
bifunctional glycosyl transferase/transpeptidaseDWB25_RS19430Not AvailableNegative3995452 - 399798694284.0

Displaying genes 3901 – 3910 of 5024 in total

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total