Pantoea agglomerans str. CFBP13505

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Erwiniaceae

Genus

Pantoea

Description

Pantoea agglomerans str. CFBP13505 is a Gram-negative, rod-shaped bacterium characterized as a nonsporulating, facultative anaerobe that thrives optimally at a temperature of 30.0°C. This organism utilizes a chemoheterotrophic mode of metabolism, indicating its reliance on organic compounds for energy and carbon. Pantoea agglomerans is known to inhabit diverse environments, which may contribute to its metabolic versatility and ecological adaptability. The facultative anaerobic nature of Pantoea agglomerans str. CFBP13505 allows it to survive in both oxygen-rich and low-oxygen conditions, thereby broadening its potential ecological niches. This trait may enable the bacterium to occupy varied habitats, from soil to plant surfaces, where it can interact with other microorganisms and host organisms. The ability to thrive in multiple environments suggests that Pantoea agglomerans str. CFBP13505 could play a role in nutrient cycling and may participate in complex microbial communities. Overall, the metabolic flexibility and ecological resilience of Pantoea agglomerans str. CFBP13505 highlight its potential importance in environmental microbiology, particularly in contexts where organic matter decomposition and nutrient dynamics are critical.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyErwiniaceae
GenusPantoea
SpeciesPantoea agglomerans
StrainCFBP13505

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Pantoea agglomerans str. CFBP13505
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature30
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Homo sapiens, Viridiplantae, Triticum aestivum
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Pantoea agglomerans strain CFBP13505 plasmid punamed1, complete

Gene Summary

Adenine Count

122810 bp

Thymine Count

123506 bp

Guanine Count

139925 bp

Cytosine Count

140910 bp

Genome Length

527151 bp

Protein-coding Genes

514 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinPagCFBP13505_RS22210Not AvailablePositive485197 - 4853917372.83
biofilm/acid-resistance regulator ymgb/arirPagCFBP13505_RS22215Not AvailableNegative485867 - 4861219188.97
hypothetical proteinPagCFBP13505_RS22220Not AvailableNegative486283 - 48657610520.6
regulatory protein ycgzPagCFBP13505_RS22225Not AvailableNegative486751 - 4869969093.81
hypothetical proteinPagCFBP13505_RS22230Not AvailableNegative487243 - 48753610814.9
metal abc transporter substrate-binding proteinPagCFBP13505_RS22235Not AvailablePositive487984 - 48889833366.0
manganese/iron abc transporter atp-binding proteinPagCFBP13505_RS22240Not AvailablePositive488895 - 48971029431.5
iron/manganese abc transporter permease subunit sitcPagCFBP13505_RS22245Not AvailablePositive489713 - 49057330735.8
metal abc transporter permeasePagCFBP13505_RS22250Not AvailablePositive490573 - 49142430409.6
hypothetical proteinPagCFBP13505_RS22255Not AvailablePositive491522 - 49183612196.4

Displaying genes 471 – 480 of 4621 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

308 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm00011795-hydroxyisourateC5H4N4O4Chemical structure of 5-hydroxyisourateNot available
Average184.1097Da
Monoisotopic184.0232546Da
BASm0001360methanesulfonateCH3O3SChemical structure of methanesulfonate59721-29-8
Average95.09Da
Monoisotopic94.980838711Da

Displaying 1–10 of 308 metabolites

Health Effects

Health ConditionRelationReference
PeritonitisCausesPMC3079607
Neonatal sepsisCausesPMC4560869
Septic arthritisCausesPMC4560869
SynovitisCausesPMC4560869
CholelithiasisCausesPMC4560869
Occupational respiratory infectionsCausesPMC4560869
Skin allergyCausesPMC4560869
PeritonitisCausesPMC4560869
Blood stream infectionCausesPMC4560869
Early onset neonatal sepsisCausesPMC4560869

Displaying health effects 1 – 10 of 12 in total