Rhizobium phaseoli

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Rhizobium

Description

Rhizobium phaseoli is a rod-shaped bacterium characterized by the presence of true flagella, which facilitate motility. This microbe possesses a complex genomic structure, comprising four replicons, indicative of a sophisticated genetic organization that may contribute to its adaptability and survival in various environments. The genome of Rhizobium phaseoli is documented with multiple accessions, specifically NZ_CP013575.1, NZ_CP013578.1, NZ_CP013574.1, and NZ_CP013576.1, highlighting its genomic diversity and potential for further research into its genetic traits and functions. The rod shape of Rhizobium phaseoli is a common characteristic among many bacteria, influencing its ecological interactions and physiological processes. The presence of true flagella suggests that this microbe is capable of active movement, which may play a role in its ability to colonize plant roots and establish symbiotic relationships. Such relationships are crucial for nitrogen fixation, a process in which Rhizobium phaseoli can convert atmospheric nitrogen into a form usable by plants, thus contributing to soil fertility. The unique combination of these traits indicates that Rhizobium phaseoli is not only a key player in agricultural ecosystems but also serves as a model organism for studying symbiotic nitrogen-fixing mechanisms. Understanding its genetic makeup and motility can provide insights into improving crop yields and sustainable agricultural practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusRhizobium
SpeciesRhizobium phaseoli
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Solanum tuberosum, Phaseolus vulgaris
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium phaseoli strain N671 plasmid pRphaN671a, complete

Gene Summary

Adenine Count

21656 bp

Thymine Count

20123 bp

Guanine Count

27283 bp

Cytosine Count

27276 bp

Genome Length

96338 bp

Protein-coding Genes

124 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nitrite reductase small subunit nirdAMC80_RS08880Not AvailableNegative1812777 - 181311211932.4
nitrite reductase large subunit nirbAMC80_RS08885Not AvailableNegative1813117 - 181556788777.2
nitrate/nitrite transporterAMC80_RS08890Not AvailableNegative1815586 - 181682744077.9
cmpa/nrta family abc transporter substrate-binding proteinAMC80_RS08895Not AvailableNegative1817220 - 181850346177.6
antar domain-containing response regulatorAMC80_RS08900Not AvailableNegative1818538 - 181912521782.7
hypothetical proteinAMC80_RS35025Not AvailableNegative1819281 - 18195028599.74
peroxiredoxinAMC80_RS08910Not AvailablePositive1819674 - 182033323752.3
hypothetical proteinAMC80_RS08915Not AvailableNegative1820393 - 182096220333.1
lytic transglycosylase domain-containing proteinAMC80_RS08920Not AvailablePositive1821145 - 182210135348.2
nad(p)-dependent oxidoreductaseAMC80_RS08925Not AvailablePositive1822195 - 182314834731.2

Displaying genes 2431 – 2440 of 5207 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

168 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da
BASm0000403(S)-acetoinC4H8O2Chemical structure of (S)-acetoinNot available
Average88.1051Da
Monoisotopic88.0524295Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm0000848hexanoateC6H11O2Chemical structure of hexanoateNot available
Average115.1503Da
Monoisotopic115.075904596Da

Displaying 1–10 of 168 metabolites

Health Effects

No health effects information available for this bacterium.