Rhizobium sp.

Rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Rhizobium

Description

Rhizobium sp. is a Gram-negative, nonsporulating bacterium that thrives in aerobic conditions, with an optimal growth temperature of 28.0°C. This microbe is commonly found in the rhizosphere, particularly in Borj Cedria soil, where it plays a crucial role in soil health and plant growth. Rhizobium species are well-known for their symbiotic relationships with leguminous plants, facilitating nitrogen fixation that enhances soil nitrogen availability, thereby promoting plant development. The presence of Rhizobium sp. in the rhizosphere underscores its importance in agricultural ecosystems, as it contributes to the sustainability of crop production through the enhancement of nitrogen content in the soil. This characteristic is particularly vital in natural and managed ecosystems, where nitrogen limitation can hinder plant growth. The ability of Rhizobium sp. to adapt to specific soil environments, such as those found in Borj Cedria, illustrates its potential for application in sustainable agricultural practices, particularly in areas where nitrogen fertilizers are not feasible or environmentally desirable. Thus, Rhizobium sp. serves as a model organism for studying plant-microbe interactions and sustainable agriculture.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusRhizobium
SpeciesRhizobium sp.
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Rhizobium sp.
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature28
Temperature rangeNot Available
HabitatBorj cedria soil; rhizosphere
Biotic relationshipNot Available
Host(s)Vicia faba, Chlamydomonas reinhardtii, Chlorella vulgaris
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Rhizobium sp. isolate EaCA-2 46000, whole genome shotgun

Gene Summary

Adenine Count

853205 bp

Thymine Count

848417 bp

Guanine Count

1522197 bp

Cytosine Count

1543091 bp

Genome Length

4767797 bp

Protein-coding Genes

4539 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
oxidoreductaseCTR54_21615Not AvailableNegative4424877 - 442593237368.6
glucuronate isomeraseCTR54_21620Not AvailablePositive4426151 - 442755752485.1
c4-dicarboxylate abc transporterCTR54_21625Not AvailablePositive4427607 - 442858436015.0
c4-dicarboxylate abc transporter permeaseCTR54_21630Not AvailablePositive4428711 - 442932522030.1
trap transporter large permeaseCTR54_21635Not AvailablePositive4429329 - 443060945254.5
gntr family transcriptional regulatorCTR54_21640Not AvailablePositive4430619 - 443139228605.0
5-dehydro-4-deoxy-d-glucuronate isomeraseCTR54_21645Not AvailablePositive4431418 - 443225130472.3
2-deoxy-d-gluconate 3-dehydrogenaseCTR54_21650Not AvailablePositive4432248 - 443300926580.9
cupinCTR54_21655Not AvailablePositive4433012 - 443335612789.9
dna polymerase subunit betaCTR54_21660Not AvailablePositive4433427 - 443426929929.6

Displaying genes 4291 – 4300 of 4602 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

2 records
Metabolite IDMetabolite nameStructureCAS number
BASm0039872Azotobacter vinelandiiNot availableNot availableNot available
BASm0040237Aspergillus oryzae RIB40Not availableNot availableNot available

Displaying 1–2 of 2 metabolites

Health Effects

Health ConditionRelationReference
Crown gallCausesPMC12602688
TumorsCausesPMC12602688
Hairy root diseasesCausesPMC12602688

Displaying health effects 1 – 3 of 3 in total