Agrobacterium sp.

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium sp. is a Gram-negative, rod-shaped bacterium characterized by the presence of true flagella, which facilitate its motility. This microbe is typically found in specific habitats such as dry sugarcane straw and rhizosphere soil, indicating its association with plant environments. Agrobacterium sp. is notable for its genomic simplicity, possessing a single replicon, and its genome has been sequenced, with the accession number DMZS00000000.1 available for reference. The ecological role of Agrobacterium sp. in the rhizosphere may involve interactions with plant roots, potentially influencing plant health and growth through various biochemical pathways. Its presence in dry sugarcane straw suggests a capacity for survival in harsh conditions, which may be linked to its adaptive strategies in nutrient-limited environments. Understanding the functional capabilities of Agrobacterium sp. could provide insights into its contributions to soil health and plant-microbe interactions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium sp.
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Agrobacterium sp.
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatdry sugarcane straw; rhizosphere soil
Biotic relationshipNot Available
Host(s)Botryococcus braunii, Glycine max, Rodentia
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG TPA_asm: Agrobacterium sp. isolate UBA11112 contig_1408, whole

Gene Summary

Adenine Count

980049 bp

Thymine Count

982281 bp

Guanine Count

1430890 bp

Cytosine Count

1425960 bp

Genome Length

4874709 bp

Protein-coding Genes

4976 genes

Non-Coding Genes

162 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
5-dehydro-4-deoxy-d-glucuronate isomeraseDCW88_16205Not AvailablePositive2931268 - 293182520376.1
2-deoxy-d-gluconate 3-dehydrogenaseDCW88_16210Not AvailablePositive2931822 - 29320808556.21
2-deoxy-d-gluconate 3-dehydrogenaseDCW88_16215Not AvailablePositive2932320 - 293282417796.2
5-dehydro-4-deoxyglucarate dehydrataseDCW88_16220Not AvailablePositive2932937 - 293384832534.2
mandelate racemaseDCW88_16225Not AvailablePositive2933873 - 293500941334.5
amidohydrolaseDCW88_16230Not AvailablePositive2935006 - 293588431939.2
mfs transporterDCW88_16235Not AvailablePositive2936009 - 293721140939.9
fadr family transcriptional regulatorDCW88_16240Not AvailableNegative2937278 - 293801226290.7
sugar abc transporter permease yjffDCW88_16245Not AvailableNegative2938030 - 293901034366.2
abc transporter permeaseDCW88_16250Not AvailableNegative2939007 - 294005335823.3

Displaying genes 3101 – 3110 of 5138 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
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Result columns

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Average massMonoisotopic mass
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Health Effects

Health ConditionRelationReference
Crown-gall diseasesCausesPMC5373542

Displaying health effects 1 – 1 of 1 in total