Agrobacterium sp.

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium sp. is a Gram-negative, rod-shaped bacterium characterized by the presence of true flagella, which facilitate its motility. This microbe is typically found in specific habitats such as dry sugarcane straw and rhizosphere soil, indicating its association with plant environments. Agrobacterium sp. is notable for its genomic simplicity, possessing a single replicon, and its genome has been sequenced, with the accession number DMZS00000000.1 available for reference. The ecological role of Agrobacterium sp. in the rhizosphere may involve interactions with plant roots, potentially influencing plant health and growth through various biochemical pathways. Its presence in dry sugarcane straw suggests a capacity for survival in harsh conditions, which may be linked to its adaptive strategies in nutrient-limited environments. Understanding the functional capabilities of Agrobacterium sp. could provide insights into its contributions to soil health and plant-microbe interactions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium sp.
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Agrobacterium sp.
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatdry sugarcane straw; rhizosphere soil
Biotic relationshipNot Available
Host(s)Botryococcus braunii, Glycine max, Rodentia
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG TPA_asm: Agrobacterium sp. isolate UBA11112 contig_1408, whole

Gene Summary

Adenine Count

980049 bp

Thymine Count

982281 bp

Guanine Count

1430890 bp

Cytosine Count

1425960 bp

Genome Length

4874709 bp

Protein-coding Genes

4976 genes

Non-Coding Genes

162 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ferredoxin--nadp(+) reductaseDCW88_12170Not AvailableNegative2221135 - 222167620399.6
duf934 domain-containing proteinDCW88_12175Not AvailableNegative2221823 - 222232918680.3
nitrite/sulfite reductaseDCW88_12180Not AvailableNegative2222340 - 222401061724.6
duf2849 domain-containing proteinDCW88_12185Not AvailableNegative2224019 - 222433311349.4
uroporphyrinogen-iii c-methyltransferaseDCW88_12190Not AvailableNegative2224326 - 222578952188.3
pp_02423DCW88_12195Not AvailablePositive2226049 - 2226617Not Available
ectoine/hydroxyectoine abc transporter atp-binding protein ehuaDCW88_12200Not AvailableNegative2226618 - 222703315284.7
abc transporter permeaseDCW88_12205Not AvailableNegative2227033 - 222791732119.5
abc transporter substrate-binding proteinDCW88_12210Not AvailableNegative2227923 - 222884633290.0
abc transporter substrate-binding proteinDCW88_12215Not AvailableNegative2228860 - 222969930373.3

Displaying genes 2341 – 2350 of 5138 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Crown-gall diseasesCausesPMC5373542

Displaying health effects 1 – 1 of 1 in total