Agrobacterium sp.

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium sp. is a Gram-negative, rod-shaped bacterium characterized by the presence of true flagella, which facilitate its motility. This microbe is typically found in specific habitats such as dry sugarcane straw and rhizosphere soil, indicating its association with plant environments. Agrobacterium sp. is notable for its genomic simplicity, possessing a single replicon, and its genome has been sequenced, with the accession number DMZS00000000.1 available for reference. The ecological role of Agrobacterium sp. in the rhizosphere may involve interactions with plant roots, potentially influencing plant health and growth through various biochemical pathways. Its presence in dry sugarcane straw suggests a capacity for survival in harsh conditions, which may be linked to its adaptive strategies in nutrient-limited environments. Understanding the functional capabilities of Agrobacterium sp. could provide insights into its contributions to soil health and plant-microbe interactions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium sp.
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Agrobacterium sp.
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatdry sugarcane straw; rhizosphere soil
Biotic relationshipNot Available
Host(s)Botryococcus braunii, Glycine max, Rodentia
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG TPA_asm: Agrobacterium sp. isolate UBA11112 contig_1408, whole

Gene Summary

Adenine Count

980049 bp

Thymine Count

982281 bp

Guanine Count

1430890 bp

Cytosine Count

1425960 bp

Genome Length

4874709 bp

Protein-coding Genes

4976 genes

Non-Coding Genes

162 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type ii toxin-antitoxin system hicb family antitoxinDCW88_06640Not AvailableNegative1191660 - 119199212051.3
type ii toxin-antitoxin system hica family toxinDCW88_06645Not AvailableNegative1191989 - 11922439476.42
hypothetical proteinDCW88_06650Not AvailableNegative1192257 - 11924758231.47
alpa family phage regulatory proteinDCW88_06655Not AvailableNegative1192564 - 11927918857.42
ti-type conjugative transfer relaxase traaDCW88_06660Not AvailableNegative1192929 - 1195883110022.0
conjugal transfer protein tradDCW88_06665Not AvailablePositive1196043 - 119638111696.8
conjugal transfer protein tradDCW88_06670Not AvailablePositive1196383 - 119665510140.2
histidine kinaseDCW88_06675Not AvailableNegative1196891 - 119825549264.1
dna-binding response regulatorDCW88_06680Not AvailableNegative1198255 - 119897126935.6
sterol desaturase family proteinDCW88_06690Not AvailablePositive1199695 - 120022819539.5

Displaying genes 1331 – 1340 of 5138 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
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Result columns

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Average massMonoisotopic mass
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Health Effects

Health ConditionRelationReference
Crown-gall diseasesCausesPMC5373542

Displaying health effects 1 – 1 of 1 in total