Agrobacterium rhizogenes str. ATCC 15834

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Martinezella

Description

Agrobacterium rhizogenes str. ATCC 15834 is a rod-shaped, Gram-negative bacterium that thrives in terrestrial habitats and exhibits an aerobic metabolism, requiring oxygen for growth. This strain is optimally active at a temperature of 25.0°C, indicating a preference for moderate environmental conditions. As a member of the Agrobacterium genus, A. rhizogenes is recognized for its role in plant interactions, particularly in the context of root development. While the specific pathogenicity of this strain has not been detailed, members of this group are known for their ability to transfer genetic material to plant cells, which can lead to the formation of root galls. This trait has significant implications for agricultural biotechnology, particularly in the genetic modification of plants. The ecological role of A. rhizogenes str. ATCC 15834 may extend beyond its interactions with plants, as its aerobic nature suggests a potential for involvement in soil nutrient cycling processes. By engaging in interactions with plant roots, this bacterium could contribute to the dynamics of microbial communities in terrestrial ecosystems, influencing plant health and soil fertility. Thus, while primarily recognized for its agricultural applications, A. rhizogenes str. ATCC 15834 may also play a critical role in broader ecological contexts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusMartinezella
SpeciesMartinezella rhizogenes
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium rhizogenes str. ATCC 15834
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipNot Available
Host(s)Viridiplantae, Solanum lycopersicum, Justicia adhatoda
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium rhizogenes strain ATCC 15834 contig_43, whole genome

Gene Summary

Adenine Count

1414281 bp

Thymine Count

1417980 bp

Guanine Count

2125184 bp

Cytosine Count

2112851 bp

Genome Length

7070307 bp

Protein-coding Genes

6387 genes

Non-Coding Genes

99 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
3-oxoacyl-acp synthaseCN09_05900Not AvailablePositive2912447 - 291373344741.1
nadph:quinone oxidoreductaseCN09_05905Not AvailablePositive2913788 - 291481636795.2
lipid a biosynthesis lauroyl acyltransferaseCN09_05910Not AvailablePositive2914822 - 291575435735.6
diguanylate cyclaseCN09_05915Not AvailablePositive2916028 - 291676227117.4
hypothetical proteinCN09_05920Not AvailableNegative2916773 - 29169646995.26
hypothetical proteinCN09_05925Not AvailableNegative2916961 - 291816644769.2
zinc transporterCN09_05930Not AvailableNegative2918259 - 291920033274.6
zinc abc transporter atp-binding proteinCN09_05935Not AvailablePositive2919300 - 292016931526.4
membrane proteinCN09_05940Not AvailablePositive2920162 - 292098929151.9
fur family transcriptional regulatorCN09_05945Not AvailablePositive2920986 - 292138414773.8

Displaying genes 2651 – 2660 of 6486 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
HrdCausesPMC11575935
Crown and cane gall symptomsCausesPMC12602688
Crown and cane gallsCausesPMC12602688
Hairy root diseaseCausesPMC8087989
Hairy root diseaseCausesPMC8347015

Displaying health effects 1 – 5 of 5 in total