Agrobacterium rhizogenes str. TPD7009

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Martinezella

Description

Agrobacterium rhizogenes str. TPD7009 is a Gram-negative, rod-shaped bacterium that thrives in terrestrial environments and exhibits aerobic metabolic capabilities. This strain is optimally adapted to growth at a temperature of 25.0°C, which may reflect its natural habitat conditions. As a member of the Agrobacterium genus, it is known for its interactions with plant systems, particularly in relation to plant transformation and root development. The Gram-negative nature of A. rhizogenes str. TPD7009 indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which is characteristic of this group of bacteria. The aerobic requirement suggests that oxygen is essential for its growth and metabolism, potentially influencing its ecological roles in soil environments where oxygen levels can vary. Given its terrestrial habitat, A. rhizogenes str. TPD7009 may play significant roles in soil ecology, including nutrient cycling and interactions with plant roots. Its unique ability to engage with plant systems could facilitate beneficial relationships that enhance plant health and growth, underscoring the importance of this strain in agricultural and ecological contexts. Further studies may reveal more about its specific interactions and contributions to terrestrial ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusMartinezella
SpeciesMartinezella rhizogenes
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium rhizogenes str. TPD7009
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipNot Available
Host(s)Viridiplantae, Solanum lycopersicum, Justicia adhatoda
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium rhizogenes strain TPD7009 Contig_56, whole genome

Gene Summary

Adenine Count

1084832 bp

Thymine Count

1079028 bp

Guanine Count

1500249 bp

Cytosine Count

1513719 bp

Genome Length

5177854 bp

Protein-coding Genes

4679 genes

Non-Coding Genes

102 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinDC430_14775Not AvailableNegative3139384 - 31396178330.17
heme abc exporter atp-binding protein ccmaDC430_14780Not AvailableNegative3139617 - 314025822990.8
aconitate hydratase acnaDC430_14785Not AvailablePositive3140532 - 314322597031.7
hypothetical proteinDC430_14790Not AvailablePositive3143486 - 314426827958.1
duf2794 domain-containing proteinDC430_14795Not AvailablePositive3144567 - 314495915006.2
bax inhibitor (bi)-1/ycca family proteinDC430_14800Not AvailableNegative3145149 - 314593127900.4
glycosyl transferase family 1DC430_14805Not AvailableNegative3146198 - 314874790271.4
abc transporter atp-binding proteinDC430_14810Not AvailableNegative3148744 - 314945724655.6
arylesteraseDC430_14815Not AvailablePositive3149525 - 315017523088.8
rna 2',3'-cyclic phosphodiesteraseDC430_14820Not AvailablePositive3150244 - 315083721918.3

Displaying genes 2931 – 2940 of 4781 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
HrdCausesPMC11575935
Crown and cane gall symptomsCausesPMC12602688
Crown and cane gallsCausesPMC12602688
Hairy root diseaseCausesPMC8087989
Hairy root diseaseCausesPMC8347015

Displaying health effects 1 – 5 of 5 in total