Agrobacterium rhizogenes str. TPD7009

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Martinezella

Description

Agrobacterium rhizogenes str. TPD7009 is a Gram-negative, rod-shaped bacterium that thrives in terrestrial environments and exhibits aerobic metabolic capabilities. This strain is optimally adapted to growth at a temperature of 25.0°C, which may reflect its natural habitat conditions. As a member of the Agrobacterium genus, it is known for its interactions with plant systems, particularly in relation to plant transformation and root development. The Gram-negative nature of A. rhizogenes str. TPD7009 indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which is characteristic of this group of bacteria. The aerobic requirement suggests that oxygen is essential for its growth and metabolism, potentially influencing its ecological roles in soil environments where oxygen levels can vary. Given its terrestrial habitat, A. rhizogenes str. TPD7009 may play significant roles in soil ecology, including nutrient cycling and interactions with plant roots. Its unique ability to engage with plant systems could facilitate beneficial relationships that enhance plant health and growth, underscoring the importance of this strain in agricultural and ecological contexts. Further studies may reveal more about its specific interactions and contributions to terrestrial ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusMartinezella
SpeciesMartinezella rhizogenes
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium rhizogenes str. TPD7009
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipNot Available
Host(s)Viridiplantae, Solanum lycopersicum, Justicia adhatoda
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium rhizogenes strain TPD7009 Contig_56, whole genome

Gene Summary

Adenine Count

1084832 bp

Thymine Count

1079028 bp

Guanine Count

1500249 bp

Cytosine Count

1513719 bp

Genome Length

5177854 bp

Protein-coding Genes

4679 genes

Non-Coding Genes

102 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
d-amino acid dehydrogenaseDC430_07035Not AvailableNegative1452412 - 145366845087.5
alanine racemaseDC430_07040Not AvailableNegative1453676 - 145484240963.4
lrp/asnc family transcriptional regulatorDC430_07045Not AvailablePositive1454970 - 145544617556.1
bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinaseDC430_07050Not AvailableNegative1455460 - 145626027618.5
thiamine phosphate synthaseDC430_07055Not AvailableNegative1456257 - 145691622957.6
hydroxyethylthiazole kinaseDC430_07060Not AvailableNegative1456903 - 145764326216.5
hypothetical proteinDC430_07065Not AvailablePositive1458023 - 145869125068.2
lysr family transcriptional regulatorDC430_07070Not AvailableNegative1458810 - 145981735878.5
protelomeraseDC430_07075Not AvailableNegative1460033 - 146137050702.7
x-pro dipeptidaseDC430_07080Not AvailableNegative1461460 - 146260241316.3

Displaying genes 1401 – 1410 of 4781 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
HrdCausesPMC11575935
Crown and cane gall symptomsCausesPMC12602688
Crown and cane gallsCausesPMC12602688
Hairy root diseaseCausesPMC8087989
Hairy root diseaseCausesPMC8347015

Displaying health effects 1 – 5 of 5 in total