Agrobacterium rhizogenes str. NCPPB2659

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Martinezella

Description

Agrobacterium rhizogenes str. NCPPB2659 is a Gram-negative, rod-shaped bacterium that thrives in terrestrial environments and exhibits aerobic metabolic characteristics. This strain has an optimal growth temperature of 25.0 °C, which suggests it is well-adapted to moderate environmental conditions typically found in soil ecosystems. As a member of the Agrobacterium genus, A. rhizogenes is recognized for its role in plant interactions, particularly in the transformation of plant cells. While specific pathogenicity traits are not detailed in the available data, the general behavior of Agrobacterium species indicates their potential involvement in plant-associated processes. The aerobic nature of A. rhizogenes str. NCPPB2659 points to its reliance on oxygen for survival and growth, which may influence its ecological niche within soil microbiomes. This adaptation allows it to compete effectively with other microorganisms in well-oxygenated soil environments. The presence of this strain in terrestrial habitats highlights its potential contributions to soil health and plant development, possibly through mechanisms such as nutrient cycling or symbiotic relationships. Understanding the traits of A. rhizogenes str. NCPPB2659 could provide insights into its ecological roles and potential applications in agriculture and biotechnology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusMartinezella
SpeciesMartinezella rhizogenes
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium rhizogenes str. NCPPB2659
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipNot Available
Host(s)Viridiplantae, Solanum lycopersicum, Justicia adhatoda
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium rhizogenes strain NCPPB2659 scaffold9.1, whole genome

Gene Summary

Adenine Count

1063871 bp

Thymine Count

1056632 bp

Guanine Count

1569985 bp

Cytosine Count

1586849 bp

Genome Length

5277347 bp

Protein-coding Genes

0 genes

Non-Coding Genes

76 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
amidohydrolaseA8L48_RS03105Not AvailableNegative643719 - 64541061698.0
hydrolaseA8L48_RS03110Not AvailableNegative645480 - 64616024596.6
pirin family proteinA8L48_RS03115Not AvailableNegative646255 - 64712130837.6
lysr family transcriptional regulatorA8L48_RS03120Not AvailablePositive647263 - 64818934095.5
lysr substrate-binding domain-containing proteinA8L48_RS03125Not AvailableNegative648232 - 64917034756.1
isochorismate family cysteine hydrolase ycacA8L48_RS03130Not AvailablePositive649317 - 64994322994.5
plp-dependent aminotransferase family proteinA8L48_RS03135Not AvailableNegative650086 - 65152251748.2
thioredoxin family proteinA8L48_RS03140Not AvailablePositive651639 - 6518758496.19
glutamine amidotransferaseA8L48_RS03145Not AvailablePositive651892 - 65264127599.9
yggs family pyridoxal phosphate-dependent enzymeA8L48_RS03150Not AvailablePositive652638 - 65339327243.7

Displaying genes 831 – 840 of 3006 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
HrdCausesPMC11575935
Crown and cane gall symptomsCausesPMC12602688
Crown and cane gallsCausesPMC12602688
Hairy root diseaseCausesPMC8087989
Hairy root diseaseCausesPMC8347015

Displaying health effects 1 – 5 of 5 in total