Agrobacterium rhizogenes str. NCPPB2659

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Martinezella

Description

Agrobacterium rhizogenes str. NCPPB2659 is a Gram-negative, rod-shaped bacterium that thrives in terrestrial environments and exhibits aerobic metabolic characteristics. This strain has an optimal growth temperature of 25.0 °C, which suggests it is well-adapted to moderate environmental conditions typically found in soil ecosystems. As a member of the Agrobacterium genus, A. rhizogenes is recognized for its role in plant interactions, particularly in the transformation of plant cells. While specific pathogenicity traits are not detailed in the available data, the general behavior of Agrobacterium species indicates their potential involvement in plant-associated processes. The aerobic nature of A. rhizogenes str. NCPPB2659 points to its reliance on oxygen for survival and growth, which may influence its ecological niche within soil microbiomes. This adaptation allows it to compete effectively with other microorganisms in well-oxygenated soil environments. The presence of this strain in terrestrial habitats highlights its potential contributions to soil health and plant development, possibly through mechanisms such as nutrient cycling or symbiotic relationships. Understanding the traits of A. rhizogenes str. NCPPB2659 could provide insights into its ecological roles and potential applications in agriculture and biotechnology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusMartinezella
SpeciesMartinezella rhizogenes
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium rhizogenes str. NCPPB2659
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipNot Available
Host(s)Viridiplantae, Solanum lycopersicum, Justicia adhatoda
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium rhizogenes strain NCPPB2659 scaffold9.1, whole genome

Gene Summary

Adenine Count

1063871 bp

Thymine Count

1056632 bp

Guanine Count

1569985 bp

Cytosine Count

1586849 bp

Genome Length

5277347 bp

Protein-coding Genes

0 genes

Non-Coding Genes

76 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Trna-argNot AvailableNot AvailablePositive2889762 - 2889838Not Available
Trna-glnNot AvailableNot AvailablePositive3015975 - 3016048Not Available
Trna-alaNot AvailableNot AvailablePositive3114090 - 3114165Not Available
Trna-ileNot AvailableNot AvailablePositive3197322 - 3197398Not Available
Trna-alaNot AvailableNot AvailablePositive3197493 - 3197568Not Available
Trna-metNot AvailableNot AvailablePositive3201664 - 3201737Not Available
Trna-metNot AvailableNot AvailablePositive3509252 - 3509328Not Available
Trna-metNot AvailableNot AvailablePositive4063559 - 4063635Not Available
Trna-alaNot AvailableNot AvailablePositive4067731 - 4067806Not Available
Trna-ileNot AvailableNot AvailablePositive4067901 - 4067977Not Available

Displaying genes 61 – 70 of 3006 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
HrdCausesPMC11575935
Crown and cane gall symptomsCausesPMC12602688
Crown and cane gallsCausesPMC12602688
Hairy root diseaseCausesPMC8087989
Hairy root diseaseCausesPMC8347015

Displaying health effects 1 – 5 of 5 in total