Agrobacterium rhizogenes str. NCPPB2659

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Martinezella

Description

Agrobacterium rhizogenes str. NCPPB2659 is a Gram-negative, rod-shaped bacterium that thrives in terrestrial environments and exhibits aerobic metabolic characteristics. This strain has an optimal growth temperature of 25.0 °C, which suggests it is well-adapted to moderate environmental conditions typically found in soil ecosystems. As a member of the Agrobacterium genus, A. rhizogenes is recognized for its role in plant interactions, particularly in the transformation of plant cells. While specific pathogenicity traits are not detailed in the available data, the general behavior of Agrobacterium species indicates their potential involvement in plant-associated processes. The aerobic nature of A. rhizogenes str. NCPPB2659 points to its reliance on oxygen for survival and growth, which may influence its ecological niche within soil microbiomes. This adaptation allows it to compete effectively with other microorganisms in well-oxygenated soil environments. The presence of this strain in terrestrial habitats highlights its potential contributions to soil health and plant development, possibly through mechanisms such as nutrient cycling or symbiotic relationships. Understanding the traits of A. rhizogenes str. NCPPB2659 could provide insights into its ecological roles and potential applications in agriculture and biotechnology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusMartinezella
SpeciesMartinezella rhizogenes
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium rhizogenes str. NCPPB2659
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipNot Available
Host(s)Viridiplantae, Solanum lycopersicum, Justicia adhatoda
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium rhizogenes strain NCPPB2659 scaffold9.1, whole genome

Gene Summary

Adenine Count

1063871 bp

Thymine Count

1056632 bp

Guanine Count

1569985 bp

Cytosine Count

1586849 bp

Genome Length

5277347 bp

Protein-coding Genes

0 genes

Non-Coding Genes

76 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
mlic family proteinA8L48_RS00215Not AvailableNegative34791 - 3515612817.4
hypothetical proteinA8L48_RS00220Not AvailableNegative35880 - 3632915905.8
ba14k family proteinA8L48_RS00225Not AvailablePositive36605 - 3693111509.5
hypothetical proteinA8L48_RS00230Not AvailablePositive37070 - 372647385.82
abc transporter atp-binding proteinA8L48_RS00235Not AvailableNegative37372 - 3922267413.7
glycoside hydrolase family 108 proteinA8L48_RS00240Not AvailableNegative39304 - 3974415896.0
hypothetical proteinA8L48_RS25430Not AvailablePositive40243 - 4059313210.5
Trna-glyNot AvailableNot AvailablePositive40643 - 40716Not Available
Trna-tyrNot AvailableNot AvailablePositive40742 - 40826Not Available
23s rrna (guanosine(2251)-2'-o)-methyltransferase rlmbA8L48_RS00255Not AvailablePositive41036 - 4192331834.3

Displaying genes 251 – 260 of 3006 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
HrdCausesPMC11575935
Crown and cane gall symptomsCausesPMC12602688
Crown and cane gallsCausesPMC12602688
Hairy root diseaseCausesPMC8087989
Hairy root diseaseCausesPMC8347015

Displaying health effects 1 – 5 of 5 in total