Agrobacterium tumefaciens str. 1D1609

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium tumefaciens str. 1D1609 is a Gram-negative, rod-shaped bacterium that thrives in a variety of habitats under aerobic conditions. Its optimal growth temperature is approximately 25.0°C, indicating a preference for moderate environmental temperatures. This strain is part of a broader genus known for its ability to interact with plant systems, particularly through mechanisms that facilitate gene transfer. As a member of the Agrobacterium species, str. 1D1609 may possess traits that allow it to utilize diverse organic compounds in its environment, which can be advantageous in varied habitats. The aerobic nature of this bacterium suggests it relies on oxygen for its metabolic processes, a trait that influences its ecological niche and interactions with other microorganisms and plants. Understanding the specific characteristics of Agrobacterium tumefaciens str. 1D1609 can inform its potential applications in biotechnology, particularly in plant genetic engineering. The ability to adapt to multiple habitats and thrive in aerobic conditions may enable this strain to play a significant role in soil ecosystems and plant-microbe interactions, highlighting its importance in ecological dynamics and potentially beneficial biotechnological applications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tumefaciens
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium tumefaciens str. 1D1609
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium tumefaciens str. 1D1609

Accession NumberNZ_CP026927.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

240 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
tn3 family transposaseAt1D1609_RS30120Not Available+235883 - 2360174676.79
tn3 family transposaseAt1D1609_RS28415Not Available-236052 - 23645014969.1
tn3 family transposaseAt1D1609_RS28420Not Available+236453 - 23688416656.1
glycerophosphodiester phosphodiesterase family proteinAt1D1609_RS28425Not Available-236894 - 23788336112.6
permeaseAt1D1609_RS28430Not Available+238138 - 23882725249.4
type ii toxin-antitoxin system phd/yefm family antitoxinAt1D1609_RS28435Not Available+239296 - 2395389084.86
type ii toxin-antitoxin system vapc family toxinAt1D1609_RS28440Not Available+239538 - 23995715057.1
site-specific integraseAt1D1609_RS28445Not Available+239947 - 24111342813.5
duf305 domain-containing proteinAt1D1609_RS28450Not Available+241215 - 24172418790.3
ggdef domain-containing proteinAt1D1609_RS28455Not Available-241796 - 24253326598.2

Displaying genes 231 – 240 of 240 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites