Pseudomonas putida str. DPA1

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas putida strain DPA1 is a Gram-negative, rod-shaped bacterium that exists primarily as single cells and is characterized by its facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. As a heterotroph, P. putida DPA1 utilizes organic compounds as its energy source, making it well-suited for nutrient-rich habitats such as soil and wastewater. This strain does not undergo sporulation, which may indicate a reliance on stable environmental conditions for survival and growth. The ecological role of Pseudomonas putida DPA1 in soil and wastewater environments is significant, as it contributes to the degradation of organic pollutants, thereby aiding in bioremediation processes. Its metabolic versatility allows it to adapt to varying nutrient availability and oxygen levels, potentially facilitating its use in biotechnological applications aimed at environmental cleanup. This adaptability highlights the importance of Pseudomonas putida DPA1 in maintaining ecosystem health and its potential for innovative applications in waste management and environmental restoration.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas putida
StrainDPA1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas putida str. DPA1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSoil - Wastewater
Biotic relationshipFree living
Host(s)Homo sapiens, Viridiplantae, Triticum aestivum
Cell arrangementSingles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityAnimal

Genome Summary

Pseudomonas putida strain DPA1 scaffold014, whole genome shotgun

Gene Summary

Adenine Count

1216865 bp

Thymine Count

1193652 bp

Guanine Count

1906742 bp

Cytosine Count

1950079 bp

Genome Length

6393883 bp

Protein-coding Genes

5630 genes

Non-Coding Genes

111 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
calcineurin-like phosphoesterase superfamily domain proteinCBL13_05814Not AvailableNegative6362001 - 636284631512.6
hypothetical proteinCBL13_05815Not AvailablePositive6362992 - 636533485979.8
aspartyl/asparaginyl beta-hydroxylaseCBL13_05816Not AvailableNegative6365360 - 636612730036.0
cdp-alcohol phosphatidyltransferaseCBL13_05817Not AvailableNegative6366249 - 636735840884.1
bifunctional ipc transferase and dipp synthaseCBL13_05818Not AvailablePositive6367592 - 636838029222.1
hypothetical proteinCBL13_05819Not AvailablePositive6368818 - 637042557778.0
hth-type transcriptional regulator cynrCBL13_05820Not AvailablePositive6370566 - 637144733079.2
alpha/beta hydrolase family proteinCBL13_05821Not AvailableNegative6371432 - 637209123442.3
inner membrane transport protein ydhpCBL13_05822Not AvailablePositive6372359 - 637354341358.9
hth-type transcriptional regulator dmlrCBL13_05823Not AvailablePositive6373606 - 637445730983.3

Displaying genes 5721 – 5730 of 5741 in total

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Nosocomial infectionsCausesPMC11585281
Nosocomial infectionsCausesPMC13243026

Displaying health effects 1 – 2 of 2 in total