Pseudomonas putida str. DPA1

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas putida strain DPA1 is a Gram-negative, rod-shaped bacterium that exists primarily as single cells and is characterized by its facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. As a heterotroph, P. putida DPA1 utilizes organic compounds as its energy source, making it well-suited for nutrient-rich habitats such as soil and wastewater. This strain does not undergo sporulation, which may indicate a reliance on stable environmental conditions for survival and growth. The ecological role of Pseudomonas putida DPA1 in soil and wastewater environments is significant, as it contributes to the degradation of organic pollutants, thereby aiding in bioremediation processes. Its metabolic versatility allows it to adapt to varying nutrient availability and oxygen levels, potentially facilitating its use in biotechnological applications aimed at environmental cleanup. This adaptability highlights the importance of Pseudomonas putida DPA1 in maintaining ecosystem health and its potential for innovative applications in waste management and environmental restoration.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas putida
StrainDPA1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas putida str. DPA1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSoil - Wastewater
Biotic relationshipFree living
Host(s)Homo sapiens, Viridiplantae, Triticum aestivum
Cell arrangementSingles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityAnimal

Genome Summary

Pseudomonas putida strain DPA1 scaffold014, whole genome shotgun

Gene Summary

Adenine Count

1216865 bp

Thymine Count

1193652 bp

Guanine Count

1906742 bp

Cytosine Count

1950079 bp

Genome Length

6393883 bp

Protein-coding Genes

5630 genes

Non-Coding Genes

111 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
d-methionine-binding lipoprotein metq precursorCBL13_05123Not AvailableNegative5656264 - 565706428764.7
dimethyl-sulfide monooxygenaseCBL13_05124Not AvailableNegative5657057 - 565844251008.3
dibenzothiophene desulfurization enzyme cCBL13_05125Not AvailableNegative5658442 - 565962342860.4
dibenzothiophene desulfurization enzyme cCBL13_05126Not AvailableNegative5659765 - 566100645264.6
l-cystine import atp-binding protein tcycCBL13_05127Not AvailableNegative5661325 - 566208327567.7
inner membrane amino-acid abc transporter permease protein yecsCBL13_05128Not AvailableNegative5662086 - 566275424516.7
cystine-binding periplasmic protein precursorCBL13_05129Not AvailableNegative5662751 - 566354528756.7
serine acetyltransferaseCBL13_05130Not AvailablePositive5663853 - 566478533517.2
high-affinity choline transport proteinCBL13_05131Not AvailablePositive5665054 - 566705773917.9
alpha-ketoglutarate-dependent taurine dioxygenaseCBL13_05132Not AvailableNegative5667121 - 566795431088.7

Displaying genes 5041 – 5050 of 5741 in total

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Nosocomial infectionsCausesPMC11585281
Nosocomial infectionsCausesPMC13243026

Displaying health effects 1 – 2 of 2 in total