Pseudomonas putida str. DPA1

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas putida strain DPA1 is a Gram-negative, rod-shaped bacterium that exists primarily as single cells and is characterized by its facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. As a heterotroph, P. putida DPA1 utilizes organic compounds as its energy source, making it well-suited for nutrient-rich habitats such as soil and wastewater. This strain does not undergo sporulation, which may indicate a reliance on stable environmental conditions for survival and growth. The ecological role of Pseudomonas putida DPA1 in soil and wastewater environments is significant, as it contributes to the degradation of organic pollutants, thereby aiding in bioremediation processes. Its metabolic versatility allows it to adapt to varying nutrient availability and oxygen levels, potentially facilitating its use in biotechnological applications aimed at environmental cleanup. This adaptability highlights the importance of Pseudomonas putida DPA1 in maintaining ecosystem health and its potential for innovative applications in waste management and environmental restoration.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas putida
StrainDPA1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas putida str. DPA1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSoil - Wastewater
Biotic relationshipFree living
Host(s)Homo sapiens, Viridiplantae, Triticum aestivum
Cell arrangementSingles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityAnimal

Genome Summary

Pseudomonas putida strain DPA1 scaffold014, whole genome shotgun

Gene Summary

Adenine Count

1216865 bp

Thymine Count

1193652 bp

Guanine Count

1906742 bp

Cytosine Count

1950079 bp

Genome Length

6393883 bp

Protein-coding Genes

5630 genes

Non-Coding Genes

111 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ubp3 associated protein bre5CBL13_02395Not AvailablePositive2640506 - 264192153263.8
fixhCBL13_02396Not AvailablePositive2641937 - 264246419324.0
putative copper-importing p-type atpase aCBL13_02397Not AvailablePositive2642616 - 264509089231.3
cytochrome oxidase maturation protein cbb3-typeCBL13_02398Not AvailablePositive2645069 - 26452847766.17
hypothetical proteinCBL13_02399Not AvailablePositive2645277 - 264596023900.3
oxygen-independent coproporphyrinogen-iii oxidaseCBL13_02400Not AvailablePositive2646066 - 264744852624.9
transcriptional activator protein anrCBL13_02401Not AvailablePositive2647635 - 264836927222.8
adenine phosphoribosyltransferaseCBL13_02402Not AvailablePositive2648425 - 264897320033.1
recombination protein recrCBL13_02403Not AvailableNegative2649092 - 264969421614.2
integrase core domain proteinCBL13_02404Not AvailablePositive2650555 - 265112421642.0

Displaying genes 2381 – 2390 of 5741 in total

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Nosocomial infectionsCausesPMC11585281
Nosocomial infectionsCausesPMC13243026

Displaying health effects 1 – 2 of 2 in total