Pseudomonas putida str. DPA1

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas putida strain DPA1 is a Gram-negative, rod-shaped bacterium that exists primarily as single cells and is characterized by its facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. As a heterotroph, P. putida DPA1 utilizes organic compounds as its energy source, making it well-suited for nutrient-rich habitats such as soil and wastewater. This strain does not undergo sporulation, which may indicate a reliance on stable environmental conditions for survival and growth. The ecological role of Pseudomonas putida DPA1 in soil and wastewater environments is significant, as it contributes to the degradation of organic pollutants, thereby aiding in bioremediation processes. Its metabolic versatility allows it to adapt to varying nutrient availability and oxygen levels, potentially facilitating its use in biotechnological applications aimed at environmental cleanup. This adaptability highlights the importance of Pseudomonas putida DPA1 in maintaining ecosystem health and its potential for innovative applications in waste management and environmental restoration.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas putida
StrainDPA1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas putida str. DPA1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSoil - Wastewater
Biotic relationshipFree living
Host(s)Homo sapiens, Viridiplantae, Triticum aestivum
Cell arrangementSingles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityAnimal

Genome Summary

Pseudomonas putida strain DPA1 scaffold014, whole genome shotgun

Gene Summary

Adenine Count

1216865 bp

Thymine Count

1193652 bp

Guanine Count

1906742 bp

Cytosine Count

1950079 bp

Genome Length

6393883 bp

Protein-coding Genes

5630 genes

Non-Coding Genes

111 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cold shock-like protein cspdCBL13_02131Not AvailablePositive2307007 - 23072739327.0
isocitrate dehydrogenaseCBL13_02132Not AvailableNegative2307345 - 230860145728.2
isocitrate dehydrogenaseCBL13_02133Not AvailablePositive2309016 - 231124179889.4
phosphatase nudjCBL13_02134Not AvailablePositive2311418 - 231185816713.8
pp_02083CBL13_02135Not AvailablePositive2311918 - 2313042Not Available
high frequency lysogenization protein hfldCBL13_02136Not AvailablePositive2313039 - 231366523356.4
adenylosuccinate lyaseCBL13_02137Not AvailablePositive2313833 - 231525152531.0
50s ribosomal protein l16 arginine hydroxylaseCBL13_02138Not AvailablePositive2315333 - 231649943908.8
putative n-acetyltransferase yjcfCBL13_02139Not AvailablePositive2316438 - 231692018133.5
dna topoisomerase 3CBL13_02140Not AvailablePositive2317130 - 231909472073.9

Displaying genes 2121 – 2130 of 5741 in total

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Nosocomial infectionsCausesPMC11585281
Nosocomial infectionsCausesPMC13243026

Displaying health effects 1 – 2 of 2 in total