Pseudomonas fragi

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas fragi is a psychrophilic bacterium predominantly found in cold environments such as cutting and processing laboratories, on the leaves of cold-adapted plants, and within various food sources, including meat and milk. This microbe is particularly notable for its ability to thrive in the cold processing facilities where temperature control is critical for food safety. The genome of Pseudomonas fragi is characterized by four replicons, which may contribute to its adaptability in fluctuating environments and its capacity to metabolize diverse substrates. The complete genomic information is available through several accessions: NQKL00000000.1, NQKK00000000.1, NQKN00000000.1, and NQKU00000000.1, providing opportunities for further genetic and functional analysis. Given its ecological niche, Pseudomonas fragi may play a significant role in food microbiology, particularly in the spoilage of perishable items stored in refrigerated conditions. This bacterium’s presence in such environments highlights its importance in understanding microbial dynamics in food safety and preservation.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas fragi
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas fragi
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatcutting and processing laboratories; leaves of cold-adapted plants; meat; milk; processing facilities
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas fragi strain F1820 Pseudomonas_fragi_F1820_Contig77,

Gene Summary

Adenine Count

1101078 bp

Thymine Count

1083773 bp

Guanine Count

1499436 bp

Cytosine Count

1531690 bp

Genome Length

5215977 bp

Protein-coding Genes

4621 genes

Non-Coding Genes

222 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
toxinCJU79_08135Not AvailablePositive1760291 - 176063513063.5
transcriptional regulatorCJU79_08140Not AvailablePositive1760632 - 176094611932.6
hypothetical proteinCJU79_08145Not AvailableNegative1761002 - 176127710271.6
Duf4236 domain-containing proteinCJU79_08150Not AvailablePositive1761792 - 17620739759.09
AttrNot AvailableNot AvailablePositive1764525 - 1764559Not Available
Tail lysinCJU79_13450Not AvailablePositive2924674 - 292531021621.0
Putative tail proteinCJU79_13455Not AvailablePositive2925320 - 292616530359.5
Tail proteinCJU79_13460Not AvailablePositive2926140 - 29263497399.78
Putative tail proteinCJU79_13465Not AvailablePositive2926418 - 292745537529.5
Glycoside hydrolase family 19 proteinCJU79_13470Not AvailablePositive2927513 - 292804619110.1

Displaying genes 9601 – 9610 of 18875 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

7 records
Metabolite IDMetabolite nameStructureCAS number
BASm0018999(S)-3-Hydroxybutanoyl-CoAC25H42N7O18P3SChemical structure of (S)-3-Hydroxybutanoyl-CoANULL
Average853.623Da
Monoisotopic853.151987801Da
BASm0034745glycodeoxycholic acidC26H43NO5Chemical structure of glycodeoxycholic acidNULL
Average449.632Da
Monoisotopic449.314123489Da
BASm0039679Bifidobacterium longumNot availableNot availableNot available
BASm0039685Alistipes finegoldiiNot availableNot availableNot available
BASm0040297Allochromatium vinosum DSM 180Not availableNot availableNot available
BASm0040447Pseudomonas fragiNot availableNot availableNot available
BASm0040476Penicillium echinulatumNot availableNot availableNot available

Displaying 1–7 of 7 metabolites

Health Effects

No health effects information available for this bacterium.