Burkholderia cepacia

Gram-negativeMicroaerophile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Burkholderia

Description

Burkholderia cepacia is a Gram-negative microbe characterized as a microaerophile, thriving in environments with limited oxygen availability. This bacterium is predominantly found in the rhizosphere, the region of soil surrounding plant roots, where it may play a role in plant-microbe interactions. The genomic structure of Burkholderia cepacia is notable for its complexity, consisting of three replicons, which may contribute to its adaptability and genetic diversity. The genome of this organism has been sequenced, with accessions available under LPKB00000000.1, QTRL00000000.1, and FOIG00000000.1. This genomic data can provide insights into its metabolic capabilities and ecological functions within its habitat. Understanding the traits of Burkholderia cepacia, particularly its microaerophilic nature and association with the rhizosphere, highlights its potential role in soil health and plant growth. The interaction between this microbe and plant roots may influence nutrient cycling and plant resilience in various environmental conditions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusBurkholderia
SpeciesBurkholderia cepacia
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Burkholderia cepacia
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophile
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrhizosphere
Biotic relationshipNot Available
Host(s)Homo sapiens, Viridiplantae, Anura
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Burkholderia cepacia strain MSMB591WGS MSMB591WGS_99, whole genome

Gene Summary

Adenine Count

1499531 bp

Thymine Count

1499971 bp

Guanine Count

2964604 bp

Cytosine Count

2970708 bp

Genome Length

8934814 bp

Protein-coding Genes

7719 genes

Non-Coding Genes

133 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
d-alanyl-d-alanine dipeptidaseWL94_05040P77790Negative994230 - 99479320572.5
rpir family transcriptional regulatorWL94_05045Not AvailableNegative994821 - 99570833083.0
cupinWL94_05050O34767Positive996249 - 99750545643.8
divalent metal cation transporterWL94_05055Q0B8F7Positive997596 - 99892146226.8
hypothetical proteinWL94_05060Not AvailableNegative998954 - 100020745772.1
hypothetical proteinWL94_05065Not AvailableNegative1000235 - 100075319635.4
abc transporter substrate-binding proteinWL94_05070A0A0H2ZGV7Negative1000956 - 100254558126.7
sugar abc transporter atpaseWL94_05075Not AvailableNegative1002683 - 100301811449.7
hypothetical proteinWL94_05080Not AvailableNegative1003276 - 100360512655.9
disulfide bond formation protein dsbaWL94_05085Not AvailableNegative1003781 - 100534055604.3

Displaying genes 961 – 970 of 23432 in total

Metabolites

582 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000249(2E,4E)-2,4-dichloromuconateC6H2Cl2O4Chemical structure of (2E,4E)-2,4-dichloromuconateNot available
Average208.98Da
Monoisotopic207.9341111Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 582 metabolites

Health Effects

Health ConditionRelationReference
Infective endocarditisCausesPMC3112426
Native valve endocarditisCausesPMC3112426
PneumoniaCausesPMC9294674

Displaying health effects 1 – 3 of 3 in total