Helicobacter cinaedi

Gram-negativeSpiralMotileMicroaerophile

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter cinaedi is a Gram-negative, microaerophilic bacterium primarily found as an intestinal resident and in wastewater treatment plants. Characterized by its unique habitat preferences, H. cinaedi thrives in environments that provide low oxygen levels, which aligns with its microaerophilic nature. This species has a single replicon, indicating a streamlined genomic organization that may facilitate its adaptability to varied ecological niches. The genome of H. cinaedi is accessible through accession number UGHX00000000.1, reflecting its potential for further genomic studies. Notably, its presence in wastewater treatment plants suggests a role in biogeochemical cycles, where it may contribute to organic matter decomposition and nutrient cycling in these engineered ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter cinaedi
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeSpiral
MobilityYes
Flagellar presenceNot Available
Number of membranesNot Available
Image of Helicobacter cinaedi
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophile
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatintestinal resident; wastewater treatment plants
Biotic relationshipNot Available
Host(s)Homo sapiens, Aves
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Helicobacter cinaedi strain NCTC12219 genome assembly, contig:

Gene Summary

Adenine Count

581295 bp

Thymine Count

569192 bp

Guanine Count

379691 bp

Cytosine Count

366955 bp

Genome Length

1897133 bp

Protein-coding Genes

1809 genes

Non-Coding Genes

93 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative radical sam domain-containing proteinNCTC12219_00106Not AvailablePositive118781 - 11986640772.1
putative processing zinc-metalloproteaseNCTC12219_00107Not AvailablePositive119983 - 12121545488.8
oxidoreductase domain-containing proteinNCTC12219_00108Not AvailableNegative121401 - 12240237864.6
ion transport proteinNCTC12219_00109Not AvailableNegative122408 - 12316328674.0
uncharacterised proteinNCTC12219_00110Not AvailableNegative123298 - 12361211474.7
tm2 domain-containing proteinNCTC12219_00111Not AvailableNegative123657 - 12400412603.8
uncharacterised proteinNCTC12219_00112Not AvailableNegative124017 - 12444516230.5
tm2 domain-containing proteinNCTC12219_00113Not AvailableNegative124858 - 12521413245.7
putative indole-3-glycerol-phosphate synthaseNCTC12219_00114Not AvailablePositive125340 - 12613429479.3
ferredoxinNCTC12219_00115Not AvailablePositive126194 - 1264459085.6

Displaying genes 171 – 180 of 1902 in total

Metabolites

88 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00055001-octadecanoyl-sn-glycero-3-phosphateC21H41O7PChemical structure of 1-octadecanoyl-sn-glycero-3-phosphateNot available
Average436.5198Da
Monoisotopic436.2589902Da
BASm0012554N-acetyl-beta-D-glucosaminyl-(1->4)-1,6-anhydro-N-acetyl-beta-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-diaminoheptanedioate-D-alanineC37H57N7O20Not availableNot available
Average919.893Da
Monoisotopic919.366934423Da
BASm0014032Acetic acidC2H4O2Chemical structure of Acetic acid64-19-7
Average60.052Da
Monoisotopic60.021129372Da
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da
BASm0014041Oleic acidC18H34O2Chemical structure of Oleic acid112-80-1
Average282.4614Da
Monoisotopic282.255880332Da
BASm0014058Myristic acidC14H28O2Chemical structure of Myristic acid544-63-8
Average228.3709Da
Monoisotopic228.20893014Da
BASm0014182Vaccenic acidC18H34O2Chemical structure of Vaccenic acidNULL
Average282.468Da
Monoisotopic282.255880335Da
BASm0014219Palmitoleic acidC16H30O2Chemical structure of Palmitoleic acidNULL
Average254.4082Da
Monoisotopic254.224580204Da
BASm0014222DiethanolamineC4H11NO2Chemical structure of DiethanolamineNULL
Average105.1356Da
Monoisotopic105.078978601Da

Displaying 1–10 of 88 metabolites

Health Effects

Health ConditionRelationReference
Pyogenic myositisCausesPMC10598506
CellulitisCausesPMC10598506
BacteremiaCausesPMC10598506
ColitisCausesPMC10598506
CystitisCausesPMC10598506
CholangitisCausesPMC10598506
ArthritisCausesPMC10598506
BacteremiaCausesPMC10732068
CellulitisCausesPMC10732068
Infected aortic aneurysmCausesPMC10732068

Displaying health effects 1 – 10 of 30 in total