Helicobacter pylori str. UM352

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter pylori strain UM352 is a Gram-negative bacterium characterized by its spirilla shape and single-cell arrangement. This microbe thrives optimally at a temperature of 37.0°C, which is consistent with its habitat as a host-associated organism, typically found in the gastric mucosa of mammals. H. pylori str. UM352 is microaerophilic, requiring reduced oxygen levels for optimal growth, which reflects its adaptation to the acidic and low-oxygen environment of the stomach. The unique morphology and growth requirements of H. pylori str. UM352 suggest that it has evolved specialized mechanisms to survive and proliferate in the harsh conditions of the gastric environment. The microaerophilic nature of this strain may also indicate its reliance on specific metabolic pathways that are suited for low-oxygen conditions, possibly involving fermentation or alternative electron transport chains. Understanding these traits can provide insights into the ecological role of H. pylori within its host, particularly regarding its interactions with the host's immune system and the microbiome. Such adaptations may be crucial for the bacterium’s survival and persistence in a dynamic and often hostile gastric ecosystem.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter pylori
StrainUM352

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Helicobacter pylori str. UM352
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Aves
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Helicobacter pylori strain UM352 Contig_8_UM352, whole genome

Gene Summary

Adenine Count

497854 bp

Thymine Count

497304 bp

Guanine Count

309622 bp

Cytosine Count

318274 bp

Genome Length

1623161 bp

Protein-coding Genes

1458 genes

Non-Coding Genes

42 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
acriflavin resistance proteinACM29_06465P25197Positive1309059 - 1312139113470.0
membrane proteinACM29_06470Not AvailablePositive1312136 - 131270520970.4
toxinACM29_06475Not AvailablePositive1312786 - 1322346348126.0
cobalt abc transporter permeaseACM29_06480Not AvailableNegative1322405 - 132316028451.3
hypothetical proteinACM29_06490Not AvailableNegative1324185 - 132451712847.5
nad-dependent dna ligase ligaACM29_06495B2UTL2Negative1324618 - 132658873958.3
chemotaxis protein chevACM29_06500O25337Positive1326666 - 132760735555.0
aspartate--trna ligaseACM29_06505B2UTL0Positive1327636 - 132936965195.0
adenylate kinaseACM29_06510B2UTK9Positive1329386 - 132996121418.8
lipopolysaccharide biosynthesis proteinACM29_06515Not AvailablePositive1329986 - 133098439368.4

Displaying genes 1231 – 1240 of 1500 in total

Metabolites

93 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001697(S)-4,5-dihydroxypentane-2,3-dioneC5H8O4Chemical structure of (S)-4,5-dihydroxypentane-2,3-dioneNot available
Average132.1146Da
Monoisotopic132.042258744Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da

Displaying 1–10 of 93 metabolites

Health Effects

Health ConditionRelationReference
Chronic gastric inflammationCausesPMC10226649
Gastric cancerCausesPMC10226649
Gastric ulcersCausesPMC10420633
Stomach carcinomaCausesPMC10420633
UlcersCausesPMC10420633
AdenocarcinomaCausesPMC10420633
Mucosa-associated lymphoid tissue lymphomaCausesPMC10420633
GerdCausesPMC10712878
GastritisCausesPMC10712878
Gastric cancerCausesPMC10732068

Displaying health effects 1 – 10 of 94 in total