Helicobacter pylori str. UM163R

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter pylori str. UM163R is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and arrangement as single cells. This strain thrives optimally at a temperature of 37.0°C, suggesting a close association with warm-blooded hosts, where it is typically found in the gastric environment. H. pylori is known for its ability to colonize the acidic conditions of the stomach, which may be facilitated by its unique morphological and physiological traits, including its spiral shape that aids in motility and colonization. The microaerophilic nature of H. pylori str. UM163R indicates that it requires reduced oxygen levels for optimal growth, which is consistent with its habitat in the gastric mucosa where oxygen concentrations are lower than in the atmosphere. This adaptation allows it to persist in a niche that is inhospitable to many other microorganisms. The strain's association with a host underscores its potential role in the complex microbial dynamics of the gastrointestinal tract. Given its specific growth conditions and habitat, H. pylori str. UM163R may contribute to the intricate balance of microbial communities within the stomach, potentially influencing the host's health through interactions with other microbial species and the host immune response. Understanding these ecological relationships can provide insights into the broader implications of H. pylori in gastrointestinal health and disease.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter pylori
StrainUM163R

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Helicobacter pylori str. UM163R
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Aves
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Helicobacter pylori strain UM163R

Gene Summary

Adenine Count

509828 bp

Thymine Count

504345 bp

Guanine Count

317975 bp

Cytosine Count

316757 bp

Genome Length

1648905 bp

Protein-coding Genes

1470 genes

Non-Coding Genes

42 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Trna-serNot AvailableNot AvailablePositive288518 - 288605Not Available
hypothetical proteinAP069_0201425Not AvailableNegative288652 - 28905915431.7
prokaryotic metallothionein family proteinAP069_0201430Not AvailableNegative289062 - 2893049218.35
16s rrna (guanine(527)-n(7))-methyltransferase rsmgAP069_0201435Not AvailableNegative289298 - 28983420521.2
trna preq1(34) s-adenosylmethionine ribosyltransferase-isomerase queaAP069_0201440Not AvailableNegative289831 - 29086839900.5
twin arginine-targeting protein translocase tatcAP069_0201445Not AvailableNegative290869 - 29163028160.9
twin arginine-targeting protein translocase tatbAP069_0201450Not AvailableNegative291623 - 29210518371.7
holliday junction dna helicase ruvbAP069_0201455Not AvailableNegative292173 - 29318337269.4
3-methyl-2-oxobutanoate hydroxymethyltransferaseAP069_0201460Not AvailableNegative293184 - 29399629823.4
hypothetical proteinAP069_0201465Not AvailablePositive294146 - 29486827335.3

Displaying genes 281 – 290 of 1512 in total

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Chronic gastric inflammationCausesPMC10226649
Gastric cancerCausesPMC10226649
Gastric ulcersCausesPMC10420633
Stomach carcinomaCausesPMC10420633
UlcersCausesPMC10420633
AdenocarcinomaCausesPMC10420633
Mucosa-associated lymphoid tissue lymphomaCausesPMC10420633
GerdCausesPMC10712878
GastritisCausesPMC10712878
Gastric cancerCausesPMC10732068

Displaying health effects 1 – 10 of 94 in total