Helicobacter pylori str. UM152

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter pylori strain UM152 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and typically exists as single cells. This strain is optimally adapted to a temperature of 37.0°C, reflecting its association with host environments, specifically the gastric mucosa of mammals. As a member of the Helicobacter genus, H. pylori is known for its ability to thrive in acidic conditions, which is a common characteristic of its habitat within the stomach. The microaerophilic nature of H. pylori suggests that it requires reduced levels of oxygen for growth, which is consistent with its niche in the gastric environment where oxygen concentrations are lower than in the atmosphere. This adaptation may confer advantages in colonization and survival within the host's stomach, as well as in evading the host's immune responses. The isolation of strain UM152 contributes to the understanding of H. pylori's genetic and phenotypic diversity. Further studies could elucidate the strain's specific metabolic pathways and interactions with the host, potentially uncovering unique adaptations that facilitate its persistence in the gastric environment. The ecological role of H. pylori in the human microbiome may offer insights into its complex relationship with host health and disease, underscoring the importance of strain-level investigations in microbial ecology.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter pylori
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Helicobacter pylori str. UM152

Accession NumberLFIS00000000.1

Gene Summary

Adenine Count

493454 bp

Thymine Count

502537 bp

Guanine Count

318272 bp

Cytosine Count

319072 bp

Genome Length

1633599 bp

Protein-coding Genes

1466 genes

Non-Coding Genes

43 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
peptidylprolyl isomeraseAEY53_00110O25748+18943 - 1950020007.5
hypothetical proteinAEY53_00115Not Available+19532 - 197387934.95
flagellar biosynthesis anti-sigma factor flgmAEY53_00120Not Available+19802 - 200057438.85
xre family transcriptional regulatorAEY53_00125Q59603+20153 - 2109436014.7
hypothetical proteinAEY53_00130Not Available+21161 - 2159516852.4
flagellar hook protein flgkAEY53_00135Not Available+21597 - 2341768281.6
gamma-glutamyltranspeptidaseAEY53_00140P18956+23564 - 2526761155.8
sel1 repeat proteinAEY53_00145Not Available+25511 - 2628129104.8
hypothetical proteinAEY53_00150Not Available+26602 - 2921498723.4
hypothetical proteinAEY53_00155Not Available+29281 - 2985321918.7

Displaying genes 21 – 30 of 1509 in total

Pathways

26 pathways

Metabolites

94 records
Metabolite IDMetabolite nameStructureCAS number
BASm00044322,4-diacetamido-2,4,6-trideoxy-beta-L-altroseC10H18N2O5Chemical structure of 2,4-diacetamido-2,4,6-trideoxy-beta-L-altroseNot available
Average246.263Da
Monoisotopic246.1215717Da
BASm0004444UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamineC17H27N4O15P2Chemical structure of UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamineNot available
Average589.364Da
Monoisotopic589.0953638Da
BASm0004488CMP-pseudaminateC22H32N5O15PChemical structure of CMP-pseudaminateNot available
Average637.493Da
Monoisotopic637.1643495Da
BASm0004531(6S)-NADHXC21H29N7O15P2Chemical structure of (6S)-NADHXNot available
Average681.446Da
Monoisotopic681.1207844Da
BASm0004532(6R)-NADHXC21H29N7O15P2Chemical structure of (6R)-NADHXNot available
Average681.446Da
Monoisotopic681.1207844Da
BASm0004533(6S)-NADPHXC21H28N7O18P3Chemical structure of (6S)-NADPHXNot available
Average759.409Da
Monoisotopic759.0725624Da
BASm0004534(6R)-NADPHXC21H28N7O18P3Chemical structure of (6R)-NADPHXNot available
Average759.409Da
Monoisotopic759.072562403Da
BASm0004565cyclic dehypoxanthinylfutalosinateC14H13O7Chemical structure of cyclic dehypoxanthinylfutalosinateNot available
Average293.252Da
Monoisotopic293.0666763Da
BASm00045736-amino-6-deoxyfutalosineC19H18N5O6Chemical structure of 6-amino-6-deoxyfutalosineNot available
Average412.383Da
Monoisotopic412.1262569Da
BASm0004720carboxynorspermidineC7H19N3O2Chemical structure of carboxynorspermidineNot available
Average177.247Da
Monoisotopic177.1466297Da

Displaying 61–70 of 94 metabolites