Helicobacter pylori str. 655/99

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter pylori strain 655/99 is a Gram-negative, microaerophilic bacterium characterized by its spiral shape and single-cell arrangement. This organism thrives optimally at a temperature of 37.0°C, which aligns with its habitat as a host-associated microbe, commonly found in the gastric environment of mammals, particularly humans. As a member of the Helicobacter genus, strain 655/99 exhibits the typical traits associated with this group, including a unique motility due to its helical structure, which enables it to navigate the viscous gastric mucus layer. The microaerophilic nature of H. pylori indicates that it requires reduced levels of oxygen for growth, which is characteristic of its niche within the stomach, where oxygen concentrations are lower than in the external environment. The adaptation of H. pylori to its acidic habitat is facilitated by various mechanisms, including the production of urease, which neutralizes gastric acid and creates a more hospitable microenvironment. The presence of this strain in the gastric microbiota underscores the complex interactions between host physiology and microbial life, providing insights into the evolution of gastric microbes and their potential roles in influencing host health. Understanding the ecological dynamics of H. pylori strain 655/99 may offer further perspectives on microbial adaptation to extreme environments within the human body.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter pylori
Strain655/99

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Helicobacter pylori str. 655/99
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Aves
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Helicobacter pylori strain 655/99 Contig45, whole genome shotgun

Gene Summary

Adenine Count

491253 bp

Thymine Count

494994 bp

Guanine Count

311336 bp

Cytosine Count

318012 bp

Genome Length

1615666 bp

Protein-coding Genes

1475 genes

Non-Coding Genes

42 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ferritinHPY655_06115Not AvailablePositive1232852 - 123335519300.8
phosphoserine phosphataseHPY655_06120Not AvailablePositive1233370 - 123399323026.1
fucosyltransferaseHPY655_06125Not AvailablePositive1234075 - 123437211576.0
30s ribosomal protein s6HPY655_06130Not AvailablePositive1234593 - 123502116999.3
single-stranded dna-binding proteinHPY655_06135Not AvailablePositive1235031 - 123557620275.7
30s ribosomal protein s18HPY655_06140Not AvailablePositive1235599 - 123585610448.9
membrane proteinHPY655_06145Not AvailablePositive1236140 - 123751449296.2
membrane proteinHPY655_06150Not AvailablePositive1237525 - 123884748643.1
hypothetical proteinHPY655_06155Not AvailablePositive1239344 - 123973615226.1
endoribonuclease vapdHPY655_06160Not AvailablePositive1239717 - 124000111188.3

Displaying genes 1181 – 1190 of 1517 in total

Metabolites

6 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00029834-CDP-2-C-methyl-D-erythritolC14H23N3O14P2Chemical structure of 4-CDP-2-C-methyl-D-erythritolNot available
Average519.294Da
Monoisotopic519.0666236Da
BASm00030584-CDP-2-C-methyl-D-erythritol 2-phosphateC14H22N3O17P3Chemical structure of 4-CDP-2-C-methyl-D-erythritol 2-phosphateNot available
Average597.257Da
Monoisotopic597.0184016Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm00034334-amino-4-deoxychorismateC10H10NO5Chemical structure of 4-amino-4-deoxychorismate133442-18-9
Average224.193Da
Monoisotopic224.056446006Da

Displaying 1–6 of 6 metabolites

Health Effects

Health ConditionRelationReference
Chronic gastric inflammationCausesPMC10226649
Gastric cancerCausesPMC10226649
Gastric ulcersCausesPMC10420633
Stomach carcinomaCausesPMC10420633
UlcersCausesPMC10420633
AdenocarcinomaCausesPMC10420633
Mucosa-associated lymphoid tissue lymphomaCausesPMC10420633
GerdCausesPMC10712878
GastritisCausesPMC10712878
Gastric cancerCausesPMC10732068

Displaying health effects 1 – 10 of 94 in total