Campylobacter coli

Gram-negativeMicroaerophile

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Campylobacteraceae

Genus

Campylobacter

Description

Campylobacter coli is a Gram-negative bacterium classified as a microaerophile, meaning it requires low levels of oxygen for optimal growth. This microbe is characterized by having seven replicons within its genome, which is documented in several accessions, including ROKQ00000000.1 and VEVX00000000.1, among others. The unique genomic structure of Campylobacter coli may contribute to its adaptability in various environments, although specifics regarding its ecological niche are not provided. The microaerophilic nature of Campylobacter coli suggests it thrives in environments with limited oxygen, such as the gastrointestinal tracts of animals, where it may play a role in the microbial community. Its Gram-negative status indicates the presence of an outer membrane, which can influence its interactions with the host and the environment. Understanding the genomic characteristics of Campylobacter coli, particularly its replicon count, could provide insights into its genetic diversity and potential for adaptation to different conditions. This adaptability may be significant in the context of its survival and persistence in fluctuating habitats.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyCampylobacteraceae
GenusCampylobacter
SpeciesCampylobacter coli
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Campylobacter coli
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophile
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgut
Biotic relationshipNot Available
Host(s)Homo sapiens, Gallus gallus, Bos
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Campylobacter coli strain 42478 NODE_82_length_237_cov_10.545455,

Gene Summary

Adenine Count

606265 bp

Thymine Count

612191 bp

Guanine Count

271099 bp

Cytosine Count

282257 bp

Genome Length

1771912 bp

Protein-coding Genes

1750 genes

Non-Coding Genes

48 genes

# of Chromosomes/Plasmids

7

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
iron-sulfur cluster assembly scaffold protein nifuNCTC12143_01926Not AvailablePositive1648412 - 16486819576.68
uncharacterised proteinNCTC12143_01927Not AvailablePositive1648668 - 164922522275.8
udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligaseNCTC12143_01928Not AvailablePositive1649209 - 165049247490.5
transcriptional regulatory proteinNCTC12143_01929Not AvailablePositive1650496 - 165080110815.0
putative periplasmic proteinNCTC12143_01930Not AvailablePositive1650798 - 165188941048.7
octaprenyl diphosphate synthase / dimethylallyltransferase / (2e,6e)-farnesyl diphosphate synthase/ geranylgeranyl diphosphate synthaseNCTC12143_01931Not AvailablePositive1651972 - 165272427877.9
transketolaseNCTC12143_01932Not AvailablePositive1652734 - 165463269565.0
putative abc transport system permease proteinNCTC12143_01933Not AvailablePositive1654634 - 165571040329.1
uncharacterized abc transporter, atp-binding protein yrbfNCTC12143_01934Not AvailablePositive1655751 - 165647327369.5
abc transporter, periplasmic substrate-binding protein, putativeNCTC12143_01935Not AvailablePositive1656547 - 165737130443.7

Displaying genes 12821 – 12830 of 12910 in total

Metabolites

122 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da
BASm0000433malonateC3H2O4Chemical structure of malonateNot available
Average102.0456Da
Monoisotopic101.9953086Da
BASm0000542HgHgChemical structure of HgNot available
Average200.59Da
Monoisotopic201.9706256Da
BASm0000908propanoateC3H5O2Chemical structure of propanoateNot available
Average73.072Da
Monoisotopic73.029502981Da

Displaying 1–10 of 122 metabolites

Health Effects

Health ConditionRelationReference
Intestinal campylobacteriosisCausesPMC10942002
CampylobacteriosisCausesPMC11434686
Diarrheal diseasesCausesPMC11434686
EnteritisCausesPMC13255289
Bloodstream infectionsCausesPMC13255289
Urinary tract infectionsCausesPMC13255289
Bacterial enteritisCausesPMC4108124
Acute bacterial enteritisCausesPMC4108124
Enteric diseaseCausesPMC9565744
CampylobacteriosisCausesPMC9565744

Displaying health effects 1 – 10 of 12 in total