Azospirillum lipoferum

Gram-negative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodospirillales

Family

Azospirillaceae

Genus

Azospirillum

Description

Azospirillum lipoferum is a Gram-negative bacterium that resides primarily in the rhizosphere, where it forms associative symbioses with plant roots. This microbe is notable for its single replicon genome, which is cataloged under the accession FXBR00000000.1. The interactions between A. lipoferum and plants are significant, as they contribute to enhanced nutrient uptake, particularly nitrogen fixation, which can improve plant growth and yield. This relationship highlights the importance of A. lipoferum in agricultural microbiology, particularly in sustainable farming practices aimed at reducing chemical fertilizer use. The ecological role of A. lipoferum underscores its potential as a biofertilizer, promoting healthier plant-soil interactions in various agricultural systems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodospirillales
FamilyAzospirillaceae
GenusAzospirillum
SpeciesAzospirillum lipoferum
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrhizosphere
Biotic relationshipassociative symbioses
Host(s)Triticum aestivum, Trifolium repens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Azospirillum lipoferum strain R1C genome assembly, contig:

Gene Summary

Adenine Count

1184325 bp

Thymine Count

1191259 bp

Guanine Count

2700595 bp

Cytosine Count

2694516 bp

Genome Length

7770695 bp

Protein-coding Genes

6566 genes

Non-Coding Genes

213 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pyruvate dehydrogenase e1 component beta subunitSAMN02982994_4878Not AvailablePositive5492254 - 549364248999.1
pyruvate dehydrogenase e2 component (dihydrolipoamide acetyltransferase)SAMN02982994_4879Not AvailablePositive5493658 - 549498344843.2
isochorismate pyruvate lyaseSAMN02982994_4880Not AvailablePositive5495009 - 549531110661.0
dihydrolipoamide dehydrogenaseSAMN02982994_4881Not AvailablePositive5495325 - 549672249250.8
protein of unknown function duf29SAMN02982994_4882Not AvailablePositive5496762 - 549724718412.6
lipoic acid synthetaseSAMN02982994_4883Not AvailablePositive5497306 - 549826235252.3
coenzyme q-binding protein coq10SAMN02982994_4884Not AvailablePositive5498318 - 549877317918.7
uncharacterized protein yjbi, contains pentapeptide repeatsSAMN02982994_4885Not AvailableNegative5498994 - 550029846113.8
hypothetical proteinSAMN02982994_4886Not AvailableNegative5500477 - 550164042525.8
enamine deaminase rida, house cleaning of reactive enamine intermediates, yjgf/yer057c/uk114 familySAMN02982994_4887Not AvailableNegative5501782 - 550224916229.3

Displaying genes 4911 – 4920 of 6779 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

11 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00032075-methyl-5,6,7,8-tetrahydromethanopterinC31H44N6O16PChemical structure of 5-methyl-5,6,7,8-tetrahydromethanopterinNot available
Average787.694Da
Monoisotopic787.2567871Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0003983di-trans,octa-cis-undecaprenyl phosphateC55H89O4PChemical structure of di-trans,octa-cis-undecaprenyl phosphateNot available
Average845.288Da
Monoisotopic844.6509455Da
BASm0004072alpha-D-glucosyl di-trans,octa-cis-undecaprenyl diphosphateC61H100O12P2Chemical structure of alpha-D-glucosyl di-trans,octa-cis-undecaprenyl diphosphateNot available
Average1087.408Da
Monoisotopic1086.6701Da
BASm00041244-(gamma-L-glutamylamino)butanalC9H16N2O4Chemical structure of 4-(gamma-L-glutamylamino)butanalNot available
Average216.2343Da
Monoisotopic216.11100701Da
BASm0004386N-acetyl-alpha-D-glucosaminyl-di-trans,octa-cis-undecaprenyl diphosphateC63H103NO12P2Chemical structure of N-acetyl-alpha-D-glucosaminyl-di-trans,octa-cis-undecaprenyl diphosphateNot available
Average1128.461Da
Monoisotopic1127.696649Da
BASm0004924UDP-N-acetyl-alpha-D-mannosaminouronateC17H22N3O18P2Chemical structure of UDP-N-acetyl-alpha-D-mannosaminouronateNot available
Average618.3134Da
Monoisotopic618.037358939Da

Displaying 1–10 of 11 metabolites

Health Effects

No health effects information available for this bacterium.