Sorangium cellulosum str. So0008-312

Gram-negative

Kingdom

Pseudomonadati

Phylum

Myxococcota

Class

Polyangia

Order

Polyangiales

Family

Polyangiaceae

Genus

Sorangium

Description

Sorangium cellulosum str. So0008-312 is a Gram-negative bacterium predominantly found in the rhizosphere, where it plays a role in plant-microbe interactions. This strain is characterized by having a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability in complex environments. The complete genomic information for this strain is cataloged under the accession number JEMA00000000.1, providing a valuable resource for further genetic and functional studies. The ecological niche of Sorangium cellulosum str. So0008-312 in the rhizosphere suggests its potential involvement in nutrient cycling and plant health. Its presence in this habitat highlights the importance of microbial communities in supporting plant growth and maintaining soil health. Understanding the traits of this strain could lead to insights into its functional roles within the rhizosphere ecosystem, particularly regarding its interactions with plant roots and other soil microorganisms.

Taxonomy

KingdomPseudomonadati
PhylumMyxococcota
ClassPolyangia
OrderPolyangiales
FamilyPolyangiaceae
GenusSorangium
SpeciesSorangium cellulosum
StrainSo0008-312

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrhizosphere
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sorangium cellulosum strain So0008-312 scaffold93, whole genome

Gene Summary

Adenine Count

1669768 bp

Thymine Count

1667129 bp

Guanine Count

4267157 bp

Cytosine Count

4255501 bp

Genome Length

11861566 bp

Protein-coding Genes

3664 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinBE15_31450Not AvailableNegative4935342 - 493587819506.2
hypothetical proteinBE15_31455Not AvailableNegative4935875 - 493648621677.3
hypothetical proteinBE15_31460Not AvailableNegative4936561 - 493693814273.9
hypothetical proteinBE15_31465Not AvailablePositive4937146 - 493838140606.5
rna polymerase subunit sigmaBE15_31470Not AvailablePositive4938462 - 493914525424.4
hypothetical proteinBE15_10425Not AvailableNegative4939385 - 494079750224.7
hypothetical proteinBE15_10430Not AvailableNegative4940801 - 494164330370.5
inositol-phosphate phosphataseBE15_10435Not AvailableNegative4942343 - 494320930166.6
udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl- meso-diaminopimelate ligaseBE15_10440Not AvailableNegative4943206 - 494469352867.8
rna polymerase subunit sigmaBE15_42620Not AvailableNegative4945730 - 494623918909.8

Displaying genes 3481 – 3490 of 3664 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1757 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm00005992,5-dihydroxypyridineC5H5NO2Chemical structure of 2,5-dihydroxypyridineNot available
Average111.1Da
Monoisotopic111.0320284Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da

Displaying 1–10 of 1757 metabolites

Health Effects

No health effects information available for this bacterium.