Sorangium cellulosum str. So0003-19-2

Gram-negative

Kingdom

Pseudomonadati

Phylum

Myxococcota

Class

Polyangia

Order

Polyangiales

Family

Polyangiaceae

Genus

Sorangium

Description

Sorangium cellulosum str. So0003-19-2 is a Gram-negative bacterium predominantly found in the rhizosphere, indicating its association with plant roots. This organism possesses a single replicon, which reflects a streamlined genomic architecture. The genome of S. cellulosum str. So0003-19-2 is cataloged under the accession number JELZ00000000.1, providing a basis for further genomic studies and comparative analysis within the Sorangium genus. The Gram-negative classification of this strain suggests features such as a thin peptidoglycan layer and an outer membrane that may influence its interactions within the rhizosphere. The specific habitat of the rhizosphere implies a role in plant-microbe interactions, potentially contributing to nutrient cycling or influencing plant health. Understanding the genomic characteristics and ecological role of Sorangium cellulosum str. So0003-19-2 could yield insights into its metabolic capabilities and its potential applications in agriculture or bioremediation, particularly in enhancing soil health and productivity.

Taxonomy

KingdomPseudomonadati
PhylumMyxococcota
ClassPolyangia
OrderPolyangiales
FamilyPolyangiaceae
GenusSorangium
SpeciesSorangium cellulosum
StrainSo0003-19-2

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrhizosphere
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sorangium cellulosum strain So0003-19-2 scaffold997, whole genome

Gene Summary

Adenine Count

1664040 bp

Thymine Count

1662860 bp

Guanine Count

4123774 bp

Cytosine Count

4130352 bp

Genome Length

11582543 bp

Protein-coding Genes

4656 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nadh dehydrogenaseBE11_32490Not AvailablePositive2950098 - 295075122213.6
nadh:ubiquinone oxidoreductase subunit kBE11_32495Not AvailablePositive2950748 - 295105911397.3
nadh dehydrogenaseBE11_32500Not AvailablePositive2951061 - 295360791925.6
nadh dehydrogenaseBE11_32505Not AvailablePositive2953604 - 295560471606.4
nadh-quinone oxidoreductase subunit nBE11_32510Not AvailablePositive2955601 - 295712752742.1
hypothetical proteinBE11_47825Not AvailableNegative2957432 - 295830130982.3
xre family transcriptional regulatorBE11_47830Not AvailablePositive2958384 - 295879414775.9
acetyl-coa carboxylase carboxyltransferase subunitBE11_47835Not AvailablePositive2958893 - 296062662547.9
anti-anti-sigma factorBE11_05485Not AvailablePositive2962975 - 296417142389.8
hypothetical proteinBE11_05490Not AvailableNegative2964224 - 296567552688.5

Displaying genes 1941 – 1950 of 4656 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1753 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm00005992,5-dihydroxypyridineC5H5NO2Chemical structure of 2,5-dihydroxypyridineNot available
Average111.1Da
Monoisotopic111.0320284Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da

Displaying 1–10 of 1753 metabolites

Health Effects

No health effects information available for this bacterium.