Xylella fastidiosa Temecula1

Gram-negativeRodNon-motileAerobe

Kingdom

Pseudomonadati

Phylum

Proteobacteria

Class

Gammaproteobacteria

Order

Xanthomonadales

Family

Xanthomonadaceae

Genus

Xylella

Description

Xylella fastidiosa is a gram negative, fastidious, xylem-limited bacterium that causes a range of economically important plant diseases including citrus variegated chlorosis disease (CVC) of oranges and other citrus fruits.X. fastidiosa is also know to cause Pierces disease, a lethal disease to grapevines.The bacterium is spread by certain kinds of leafhoppers known as sharpshooters. While snacking, these insects carry the bacterial infection from plant to plant, transferring X. fastidiosa directly into the plant's xylem, the vascular tissues. There, the bacteria multiply, clogging the plant's internal plumbing and blocking the flow of water to leaves. Trees and plants weaken, leaves discolour, and fruits appear prematurely, remaining small, hard and worthless. Other strains cause leaf scorching of woody perennials such as American elm, maple, mulberry, or plum.The genome sequence reveals the presence of homologues of virulence factors in animal pathogens. Also, genes involved in ion-sequestration and the production of toxins and antibiotics were detected. Such genes may have been acquired by X. fastidiosa (via horizontal gene transfer) to respond to plant defence mechanisms or pesticidal control.Xylella fastidiosa was the first plant pathogen and the first plant associated bacterium to have been sequenced.(From http://www.ebi.ac.uk/2can/genomes/bacteria.html) (BacMap)

Taxonomy

KingdomPseudomonadati
PhylumProteobacteria
ClassGammaproteobacteria
OrderXanthomonadales
FamilyXanthomonadaceae
GenusXylella
Speciesfastidiosa
StrainTemecula1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Xylella fastidiosa Temecula1
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature26
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Grapevine
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Xylella fastidiosa Temecula1

Accession NumberNC_004556

Gene Summary

Adenine Count

605295 bp

Thymine Count

609845 bp

Guanine Count

659450 bp

Cytosine Count

645212 bp

Genome Length

2519802 bp

Protein-coding Genes

2217426 genes

Non-Coding Genes

302376 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Abc transporterPD_RS01900Q87EF0+450846 - 45259464187.6
tetraacyldisaccharide 4'-kinasePD_RS01905B2I804+452591 - 45361038320.3
AttlNot AvailableNot Available+453721 - 453732Not Available
Phage-related tail proteinPD_RS01910Not Available-454017 - 45471825600.5
Putative phage tail fiber proteinPD_RS01915Not Available-454741 - 45560730559.9
Phage-related tail proteinPD_RS01920Not Available-455615 - 45617220603.0
Phage-related baseplate assembly proteinPD_RS01925Not Available-456165 - 45705832150.3
Phage-related baseplate assembly proteinPD_RS01930P51768-457058 - 45739612255.0
Plasmid maintenance system killer higbPD_RS01935Not Available+457594 - 45787510639.8
Putative xre family plasmid maintenance system antidote proteinPD_RS01940P37371+457886 - 45816110073.3

Displaying genes 1 – 10 of 4546 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

139 records
Metabolite IDMetabolite nameStructureCAS number
BASm0005086D-galactosamine 6-phosphateC6H14NO8PChemical structure of D-galactosamine 6-phosphate3616-42-0
Average259.151Da
Monoisotopic259.0457029Da
BASm0005236O-ureido-L-serineC4H9N3O4Chemical structure of O-ureido-L-serineNot available
Average163.133Da
Monoisotopic163.059305782Da
BASm00054871-(9Z-octadecenoyl)-sn-glycero-3-phosphateC21H39O7PChemical structure of 1-(9Z-octadecenoyl)-sn-glycero-3-phosphateNot available
Average434.511Da
Monoisotopic434.244437754Da
BASm00055344-methylpentanoateC6H11O2Chemical structure of 4-methylpentanoateNot available
Average115.153Da
Monoisotopic115.0764532Da
BASm00063042-iminoacetateC2H3NO2Chemical structure of 2-iminoacetateNot available
Average73.0507Da
Monoisotopic73.01637835Da
BASm0006661UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-alpha-D-glucosamineC43H75N3O20P2Chemical structure of UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-alpha-D-glucosamineNot available
Average1016.0112Da
Monoisotopic1015.441915Da
BASm0007001UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamateC28H39N5O23P2Chemical structure of UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamateNot available
Average875.582Da
Monoisotopic875.1533009Da
BASm0007003UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptanedioateC35H51N7O26P2Chemical structure of UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptanedioateNot available
Average1047.7583Da
Monoisotopic1047.235898Da
BASm0007086(2E)-dodecenoateC12H21O2Chemical structure of (2E)-dodecenoateNot available
Average197.299Da
Monoisotopic197.1547035Da
BASm0007308N-tetradecanoylethanolamineC16H33NO2Chemical structure of N-tetradecanoylethanolamineNot available
Average271.445Da
Monoisotopic271.251129307Da

Displaying 101–110 of 139 metabolites