Xylella fastidiosa Temecula1

Gram-negativeRodNon-motileAerobe

Kingdom

Pseudomonadati

Phylum

Proteobacteria

Class

Gammaproteobacteria

Order

Xanthomonadales

Family

Xanthomonadaceae

Genus

Xylella

Description

Xylella fastidiosa is a gram negative, fastidious, xylem-limited bacterium that causes a range of economically important plant diseases including citrus variegated chlorosis disease (CVC) of oranges and other citrus fruits.X. fastidiosa is also know to cause Pierces disease, a lethal disease to grapevines.The bacterium is spread by certain kinds of leafhoppers known as sharpshooters. While snacking, these insects carry the bacterial infection from plant to plant, transferring X. fastidiosa directly into the plant's xylem, the vascular tissues. There, the bacteria multiply, clogging the plant's internal plumbing and blocking the flow of water to leaves. Trees and plants weaken, leaves discolour, and fruits appear prematurely, remaining small, hard and worthless. Other strains cause leaf scorching of woody perennials such as American elm, maple, mulberry, or plum.The genome sequence reveals the presence of homologues of virulence factors in animal pathogens. Also, genes involved in ion-sequestration and the production of toxins and antibiotics were detected. Such genes may have been acquired by X. fastidiosa (via horizontal gene transfer) to respond to plant defence mechanisms or pesticidal control.Xylella fastidiosa was the first plant pathogen and the first plant associated bacterium to have been sequenced.(From http://www.ebi.ac.uk/2can/genomes/bacteria.html) (BacMap)

Taxonomy

KingdomPseudomonadati
PhylumProteobacteria
ClassGammaproteobacteria
OrderXanthomonadales
FamilyXanthomonadaceae
GenusXylella
Speciesfastidiosa
StrainTemecula1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Xylella fastidiosa Temecula1
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature26
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Grapevine
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Xylella fastidiosa Temecula1

Accession NumberNC_004556

Gene Summary

Adenine Count

605295 bp

Thymine Count

609845 bp

Guanine Count

659450 bp

Cytosine Count

645212 bp

Genome Length

2519802 bp

Protein-coding Genes

2217426 genes

Non-Coding Genes

302376 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
type ii toxin-antitoxin system mqsr family toxinPD_RS01945Q46865+458249 - 45855110949.3
type ii toxin-antitoxin system mqsa family antitoxinPD_RS01950Q46864+458554 - 45895514944.8
Putative baseplate assembly protein vPD_RS01955Not Available-459024 - 45961120576.3
Putative minor tail proteinPD_RS01960Not Available-459608 - 46015020097.6
Hypothetical proteinPD_RS01965Not Available-460126 - 46064719764.2
Putative head-tail attachment proteinPD_RS01970Not Available-460644 - 46096712236.2
hypothetical proteinPD_RS01975Not Available-460967 - 4612278952.81
Major capsid proteinPD_RS01980Not Available-461245 - 46311967642.5
Capsid proteinPD_RS01985B0ZSF2-463116 - 46374823621.7
Dna polymerase aPD_RS01990Q9T1Q3+463799 - 46426316804.1

Displaying genes 11 – 20 of 4546 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

139 records
Metabolite IDMetabolite nameStructureCAS number
BASm0002780orotidine 5'-phosphateC10H10N2O11PNot available2149-82-8
Average365.168Da
Monoisotopic365.003866888Da
BASm0002826(2R)-3-phospho-glyceroyl phosphateC3H4O10P2Chemical structure of (2R)-3-phospho-glyceroyl phosphateNot available
Average262.005Da
Monoisotopic261.9301646Da
BASm0002833FMNH2C17H21N4O9PChemical structure of FMNH25666-16-0
Average456.3438Da
Monoisotopic456.1046148Da
BASm0002842UDP-alpha-D-xyloseC14H20N2O16P2Chemical structure of UDP-alpha-D-xyloseNot available
Average534.2599Da
Monoisotopic534.028805626Da
BASm0002844UDP-alpha-D-galacturonateC15H19N2O18P2Chemical structure of UDP-alpha-D-galacturonateNot available
Average577.262Da
Monoisotopic577.012456516Da
BASm0002846GDP-6-deoxy-alpha-D-taloseC16H23N5O15P2Chemical structure of GDP-6-deoxy-alpha-D-taloseNot available
Average587.329Da
Monoisotopic587.0676862Da
BASm0002906all-trans-octaprenyl diphosphateC40H65O7P2Chemical structure of all-trans-octaprenyl diphosphateNot available
Average719.8874Da
Monoisotopic719.4205525Da
BASm0002963meso-2,6-diaminoheptanedioateC7H14N2O4Chemical structure of meso-2,6-diaminoheptanedioate922-54-3
Average190.1971Da
Monoisotopic190.0953569Da
BASm00029834-CDP-2-C-methyl-D-erythritolC14H23N3O14P2Chemical structure of 4-CDP-2-C-methyl-D-erythritolNot available
Average519.294Da
Monoisotopic519.0666236Da
BASm00030222-methyl-cis-aconitateC7H5O6Chemical structure of 2-methyl-cis-aconitateNot available
Average185.113Da
Monoisotopic185.0102586Da

Displaying 41–50 of 139 metabolites